From 0d96fa21b70d37ba53f68535b4a29d361b14f12b Mon Sep 17 00:00:00 2001
From: Alexander Rose <alexander.rose@weirdbyte.de>
Date: Sun, 26 Jun 2022 14:03:09 -0700
Subject: [PATCH] schema updates
---
src/extensions/rcsb/graphql/types.ts | 19 +++++--------------
src/mol-io/reader/cif/schema/bird.ts | 2 +-
src/mol-io/reader/cif/schema/ccd.ts | 2 +-
src/mol-io/reader/cif/schema/mmcif.ts | 4 ++--
4 files changed, 9 insertions(+), 18 deletions(-)
diff --git a/src/extensions/rcsb/graphql/types.ts b/src/extensions/rcsb/graphql/types.ts
index 2b62e1077..a113cbbe2 100644
--- a/src/extensions/rcsb/graphql/types.ts
+++ b/src/extensions/rcsb/graphql/types.ts
@@ -4,7 +4,7 @@ export type InputMaybe<T> = Maybe<T>;
export type Exact<T extends { [key: string]: unknown }> = { [K in keyof T]: T[K] };
export type MakeOptional<T, K extends keyof T> = Omit<T, K> & { [SubKey in K]?: Maybe<T[SubKey]> };
export type MakeMaybe<T, K extends keyof T> = Omit<T, K> & { [SubKey in K]: Maybe<T[SubKey]> };
-// Generated on 2022-04-30T15:35:08-07:00
+// Generated on 2022-06-26T14:02:35-07:00
/** All built-in and custom scalars, mapped to their actual values */
export type Scalars = {
@@ -3216,15 +3216,6 @@ export type GroupEntry = {
readonly rcsb_id: Scalars['String'];
};
-export type GroupMembersAlignmentAlignedRegions = {
- /** Aligned region length */
- readonly length: Scalars['Int'];
- /** Entity seqeunce start position */
- readonly query_begin: Scalars['Int'];
- /** NCBI sequence start position */
- readonly target_begin: Scalars['Int'];
-};
-
export type GroupMembersAlignmentScores = {
readonly query_coverage: Scalars['Int'];
readonly query_length: Scalars['Int'];
@@ -10519,7 +10510,7 @@ export type RcsbPolymerEntityGroupMembership = {
export type RcsbPolymerEntityGroupSequenceAlignment = {
/** Abstract reference where group members can be aligned to generate a MSA */
readonly abstract_reference: RcsbPolymerEntityGroupSequenceAlignmentAbstractReference;
- /** List of alignments with core_entity canonical sequences */
+ /** Alignment with a core_entity canonical sequence */
readonly group_members_alignment: ReadonlyArray<Maybe<RcsbPolymerEntityGroupSequenceAlignmentGroupMembersAlignment>>;
};
@@ -10531,9 +10522,9 @@ export type RcsbPolymerEntityGroupSequenceAlignmentAbstractReference = {
};
export type RcsbPolymerEntityGroupSequenceAlignmentGroupMembersAlignment = {
- /** Aligned region */
- readonly aligned_regions: ReadonlyArray<Maybe<GroupMembersAlignmentAlignedRegions>>;
- readonly member_id?: Maybe<Scalars['String']>;
+ /** Alignment region encoded as a triplet [query_begin, target_begin, length] */
+ readonly aligned_regions: ReadonlyArray<Maybe<ReadonlyArray<Maybe<Scalars['Int']>>>>;
+ readonly member_id: Scalars['String'];
/** Alignment scores */
readonly scores: GroupMembersAlignmentScores;
};
diff --git a/src/mol-io/reader/cif/schema/bird.ts b/src/mol-io/reader/cif/schema/bird.ts
index 911af7b53..5d88c181a 100644
--- a/src/mol-io/reader/cif/schema/bird.ts
+++ b/src/mol-io/reader/cif/schema/bird.ts
@@ -1,7 +1,7 @@
/**
* Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
- * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.358, IHM 1.17, MA 1.4.0.
+ * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.359, IHM 1.17, MA 1.4.1.
*
* @author molstar/ciftools package
*/
diff --git a/src/mol-io/reader/cif/schema/ccd.ts b/src/mol-io/reader/cif/schema/ccd.ts
index 94c5b3259..86ea24606 100644
--- a/src/mol-io/reader/cif/schema/ccd.ts
+++ b/src/mol-io/reader/cif/schema/ccd.ts
@@ -1,7 +1,7 @@
/**
* Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
- * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.358, IHM 1.17, MA 1.4.0.
+ * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.359, IHM 1.17, MA 1.4.1.
*
* @author molstar/ciftools package
*/
diff --git a/src/mol-io/reader/cif/schema/mmcif.ts b/src/mol-io/reader/cif/schema/mmcif.ts
index 30dc5254d..51d060ddc 100644
--- a/src/mol-io/reader/cif/schema/mmcif.ts
+++ b/src/mol-io/reader/cif/schema/mmcif.ts
@@ -1,7 +1,7 @@
/**
* Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
- * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.358, IHM 1.17, MA 1.4.0.
+ * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.359, IHM 1.17, MA 1.4.1.
*
* @author molstar/ciftools package
*/
@@ -4888,7 +4888,7 @@ export const mmCIF_Schema = {
* The name of the database containing reference information about
* this entity or biological unit.
*/
- db_name: Aliased<'UNP' | 'GB' | 'OrthoDB' | 'NCBI' | 'JGI' | 'Other'>(str),
+ db_name: Aliased<'UNP' | 'GB' | 'OrthoDB' | 'NCBI' | 'JGI' | 'Phytozyme' | 'Other'>(str),
/**
* The code for this entity or biological unit or for a closely
* related entity or biological unit in the named database.
--
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