From 231970515a14aa029abf89d4962bcbcd13d00fdf Mon Sep 17 00:00:00 2001
From: David Sehnal <david.sehnal@gmail.com>
Date: Fri, 28 Sep 2018 11:58:29 +0200
Subject: [PATCH] model-server download props util tweak
---
src/servers/model/utils/fetch-props-pdbe.ts | 19 +++++++++++++++----
1 file changed, 15 insertions(+), 4 deletions(-)
diff --git a/src/servers/model/utils/fetch-props-pdbe.ts b/src/servers/model/utils/fetch-props-pdbe.ts
index 0f3caf635..f28d9946b 100644
--- a/src/servers/model/utils/fetch-props-pdbe.ts
+++ b/src/servers/model/utils/fetch-props-pdbe.ts
@@ -68,10 +68,21 @@ async function process() {
for (const e of entries) {
const ts = now();
console.log(`${prog}/${entries.length} ${e.entries.length} entries.`)
- const body = e.entries.join(',');
- const query = await fetch(`https://www.ebi.ac.uk/pdbe/api/validation/residuewise_outlier_summary/entry`, { method: 'POST', body });
- const data = await query.text();
- fs.writeFileSync(path.join(cmdArgs.out, e.key + '.json'), data);
+ const data = Object.create(null);
+
+ for (let ee of e.entries) {
+ const query = await fetch(`https://www.ebi.ac.uk/pdbe/api/validation/residuewise_outlier_summary/entry/${ee}`);
+ try {
+ if (query.status === 200) data[ee] = (await query.json())[ee] || { };
+ else console.error(ee, query.status);
+ } catch (e) {
+ console.error(ee, '' + e);
+ }
+ }
+ //const query = await fetch(`https://www.ebi.ac.uk/pdbe/api/validation/residuewise_outlier_summary/entry`, { method: 'POST', body });
+ //console.log(query.status);
+ //const data = await query.text();
+ fs.writeFileSync(path.join(cmdArgs.out, e.key + '.json'), JSON.stringify(data));
const time = now() - started;
console.log(`${++prog}/${entries.length} in ${PerformanceMonitor.format(time)} (last ${PerformanceMonitor.format(now() - ts)}, avg ${PerformanceMonitor.format(time / prog)})`);
}
--
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