diff --git a/.eslintrc.json b/.eslintrc.json
index 933594f7fa724af9a9edf400be4578882f8f0b8d..23a38ed5a21d4753b46e50e59f61f35482795290 100644
--- a/.eslintrc.json
+++ b/.eslintrc.json
@@ -48,7 +48,8 @@
"prefer-const": ["error", {
"destructuring": "all",
"ignoreReadBeforeAssign": false
- }]
+ }],
+ "space-before-function-paren": "off"
},
"overrides": [
{
@@ -99,7 +100,12 @@
"error",
"1tbs", { "allowSingleLine": true }
],
- "@typescript-eslint/comma-spacing": "error"
+ "@typescript-eslint/comma-spacing": "error",
+ "@typescript-eslint/space-before-function-paren": ["error", {
+ "anonymous": "always",
+ "named": "never",
+ "asyncArrow": "always"
+ }]
}
}
]
diff --git a/src/apps/docking-viewer/viewport.tsx b/src/apps/docking-viewer/viewport.tsx
index 4d4b5015420fd805bb47d2f91986e8b7180c2bd9..2e954753cfd76fd15f1fa0aad1f75b01d7fc1111 100644
--- a/src/apps/docking-viewer/viewport.tsx
+++ b/src/apps/docking-viewer/viewport.tsx
@@ -238,7 +238,7 @@ export class ViewportComponent extends PluginUIComponent {
pocketPreset = () => this.set(PocketPreset);
interactionsPreset = () => this.set(InteractionsPreset);
- get showButtons () {
+ get showButtons() {
return this.plugin.config.get(ShowButtons);
}
diff --git a/src/cli/cifschema/util/generate.ts b/src/cli/cifschema/util/generate.ts
index a47f4e5b63e92368607835eeb53025931c6e4d55..96bdd5bfd8ebab38e3f7066962c36272897b7a95 100644
--- a/src/cli/cifschema/util/generate.ts
+++ b/src/cli/cifschema/util/generate.ts
@@ -8,7 +8,7 @@ import { Database, Filter, Column } from './schema';
import { indentString } from '../../../mol-util/string';
import { FieldPath } from '../../../mol-io/reader/cif/schema';
-function header (name: string, info: string, moldataImportPath: string) {
+function header(name: string, info: string, moldataImportPath: string) {
return `/**
* Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
@@ -22,7 +22,7 @@ import { Database, Column } from '${moldataImportPath}/db';
import Schema = Column.Schema;`;
}
-function footer (name: string) {
+function footer(name: string) {
return `
export type ${name}_Schema = typeof ${name}_Schema;
export interface ${name}_Database extends Database<${name}_Schema> {};`;
@@ -89,7 +89,7 @@ function doc(description: string, spacesCount: number) {
].join('\n');
}
-export function generate (name: string, info: string, schema: Database, fields: Filter | undefined, moldataImportPath: string, addAliases: boolean) {
+export function generate(name: string, info: string, schema: Database, fields: Filter | undefined, moldataImportPath: string, addAliases: boolean) {
const codeLines: string[] = [];
if (fields) {
diff --git a/src/cli/cifschema/util/schema.ts b/src/cli/cifschema/util/schema.ts
index 9763930cd5750140894a253762e01ee1633512c1..38081d104f9d1e7c651ac0589bc9a5349933cec1 100644
--- a/src/cli/cifschema/util/schema.ts
+++ b/src/cli/cifschema/util/schema.ts
@@ -51,7 +51,7 @@ export function ListCol(subType: 'int' | 'str' | 'float' | 'coord', separator: s
export type Filter = { [ table: string ]: { [ column: string ]: true } }
-export function mergeFilters (...filters: Filter[]) {
+export function mergeFilters(...filters: Filter[]) {
const n = filters.length;
const mergedFilter: Filter = {};
const fields: Map<string, number> = new Map();
diff --git a/src/extensions/rcsb/assembly-symmetry/representation.ts b/src/extensions/rcsb/assembly-symmetry/representation.ts
index ea36afe85155700399a53ea717b491d7d61ec4bd..92bb70c8d89faa14acc786b093c20b243768c055 100644
--- a/src/extensions/rcsb/assembly-symmetry/representation.ts
+++ b/src/extensions/rcsb/assembly-symmetry/representation.ts
@@ -310,7 +310,7 @@ function setSymbolTransform(t: Mat4, symbol: string, axes: AssemblySymmetry.Rota
}
}
-const unitCircleDirections = (function() {
+const unitCircleDirections = (function () {
const dirs: Vec3[] = [];
const circle = polygon(12, false, 1);
for (let i = 0, il = circle.length; i < il; i += 3) {
diff --git a/src/mol-canvas3d/camera.ts b/src/mol-canvas3d/camera.ts
index 835c9198e02fcd41d1236aff2188a4f4edd305ce..5d1f7a584c02a832aa21cc3008f45bad241dc54a 100644
--- a/src/mol-canvas3d/camera.ts
+++ b/src/mol-canvas3d/camera.ts
@@ -34,7 +34,7 @@ class Camera implements ICamera {
readonly inverseProjectionView: Mat4 = Mat4.identity();
private pixelScale: number
- get pixelRatio () {
+ get pixelRatio() {
const dpr = (typeof window !== 'undefined') ? window.devicePixelRatio : 1;
return dpr * this.pixelScale;
}
diff --git a/src/mol-canvas3d/camera/util.ts b/src/mol-canvas3d/camera/util.ts
index 0e3b31766debbb99e731c9dfd7b31cee4403825d..6e787cbb0595ee654fed8b8ff6f943e700f27663 100644
--- a/src/mol-canvas3d/camera/util.ts
+++ b/src/mol-canvas3d/camera/util.ts
@@ -61,7 +61,7 @@ const FAR_RANGE = 1;
const tmpVec4 = Vec4();
/** Transform point into 2D window coordinates. */
-export function cameraProject (out: Vec4, point: Vec3, viewport: Viewport, projectionView: Mat4) {
+export function cameraProject(out: Vec4, point: Vec3, viewport: Viewport, projectionView: Mat4) {
const { x: vX, y: vY, width: vWidth, height: vHeight } = viewport;
// clip space -> NDC -> window coordinates, implicit 1.0 for w component
@@ -90,7 +90,7 @@ export function cameraProject (out: Vec4, point: Vec3, viewport: Viewport, proje
* Transform point from screen space to 3D coordinates.
* The point must have x and y set to 2D window coordinates and z between 0 (near) and 1 (far).
*/
-export function cameraUnproject (out: Vec3, point: Vec3, viewport: Viewport, inverseProjectionView: Mat4) {
+export function cameraUnproject(out: Vec3, point: Vec3, viewport: Viewport, inverseProjectionView: Mat4) {
const { x: vX, y: vY, width: vWidth, height: vHeight } = viewport;
const x = point[0] - vX;
diff --git a/src/mol-canvas3d/helper/bounding-sphere-helper.ts b/src/mol-canvas3d/helper/bounding-sphere-helper.ts
index 1e8a3125ddece82a6037353780a82ed41fa1eee6..ec230bf1f119ae7c251e8f18506c78d8e6e72aa8 100644
--- a/src/mol-canvas3d/helper/bounding-sphere-helper.ts
+++ b/src/mol-canvas3d/helper/bounding-sphere-helper.ts
@@ -121,7 +121,7 @@ export class BoundingSphereHelper {
}
get props() { return this._props as Readonly<DebugHelperProps>; }
- setProps (props: Partial<DebugHelperProps>) {
+ setProps(props: Partial<DebugHelperProps>) {
Object.assign(this._props, props);
if (this.isEnabled) this.update();
}
diff --git a/src/mol-canvas3d/util.ts b/src/mol-canvas3d/util.ts
index a3955e5a121e6088a4c83e3641613a05c46b1b4e..8d5cfb353f7c684a71b4f05194faf463c6c1292d 100644
--- a/src/mol-canvas3d/util.ts
+++ b/src/mol-canvas3d/util.ts
@@ -12,7 +12,7 @@ export function setCanvasSize(canvas: HTMLCanvasElement, width: number, height:
}
/** Resize canvas to container element taking `devicePixelRatio` into account */
-export function resizeCanvas (canvas: HTMLCanvasElement, container: HTMLElement, scale = 1) {
+export function resizeCanvas(canvas: HTMLCanvasElement, container: HTMLElement, scale = 1) {
let width = window.innerWidth;
let height = window.innerHeight;
if (container !== document.body) {
diff --git a/src/mol-data/int/tuple.ts b/src/mol-data/int/tuple.ts
index 1ff1e76263cc2cf38305dc63ee691e46ba4153e1..26c2c7d59357b7bcfdafc832732e2d0c0b5213ff 100644
--- a/src/mol-data/int/tuple.ts
+++ b/src/mol-data/int/tuple.ts
@@ -15,7 +15,7 @@ interface IntTuple { '@type': 'int-tuple' }
namespace IntTuple {
export const Zero: IntTuple = 0 as any;
- const { _int32, _float64, _int32_1, _float64_1 } = (function() {
+ const { _int32, _float64, _int32_1, _float64_1 } = (function () {
const data = new ArrayBuffer(8);
const data_1 = new ArrayBuffer(8);
return {
diff --git a/src/mol-geo/geometry/mesh/mesh-builder.ts b/src/mol-geo/geometry/mesh/mesh-builder.ts
index f3a95d6829d66fd04413086540188311ce61f11a..145aa1fd5a8e6875e40bd37f3224bd13d6bbeb3b 100644
--- a/src/mol-geo/geometry/mesh/mesh-builder.ts
+++ b/src/mol-geo/geometry/mesh/mesh-builder.ts
@@ -152,7 +152,7 @@ export namespace MeshBuilder {
});
}
- export function getMesh (state: State): Mesh {
+ export function getMesh(state: State): Mesh {
const { vertices, normals, indices, groups, mesh } = state;
const vb = ChunkedArray.compact(vertices, true) as Float32Array;
const ib = ChunkedArray.compact(indices, true) as Uint32Array;
diff --git a/src/mol-geo/geometry/text/font-atlas.ts b/src/mol-geo/geometry/text/font-atlas.ts
index a650a9e0b8a1728db504556a81637057b999f87b..f4355d228a626de1de5b0520647bdddf04bb8609 100644
--- a/src/mol-geo/geometry/text/font-atlas.ts
+++ b/src/mol-geo/geometry/text/font-atlas.ts
@@ -10,7 +10,7 @@ import { createTextureImage, TextureImage } from '../../../mol-gl/renderable/uti
const TextAtlasCache: { [k: string]: FontAtlas } = {};
-export function getFontAtlas (props: Partial<FontAtlasProps>) {
+export function getFontAtlas(props: Partial<FontAtlasProps>) {
const hash = JSON.stringify(props);
if (TextAtlasCache[hash] === undefined) {
TextAtlasCache[hash] = new FontAtlas(props);
@@ -69,7 +69,7 @@ export class FontAtlas {
private readonly maxWidth: number
private readonly middle: number
- constructor (props: Partial<FontAtlasProps> = {}) {
+ constructor(props: Partial<FontAtlasProps> = {}) {
const p = { ...PD.getDefaultValues(FontAtlasParams), ...props };
this.props = p;
@@ -110,7 +110,7 @@ export class FontAtlas {
this.placeholder = this.get(String.fromCharCode(0xFFFD));
}
- get (char: string) {
+ get(char: string) {
if (this.mapped[char] === undefined) {
this.draw(char);
@@ -144,7 +144,7 @@ export class FontAtlas {
return this.mapped[char];
}
- draw (char: string) {
+ draw(char: string) {
const h = this.lineHeight;
const ctx = this.scratchContext;
const data = this.scratchData;
diff --git a/src/mol-geo/util.ts b/src/mol-geo/util.ts
index 754e226ea5e90e7d4117e1502131aed55c636a62..0aaf37d9d2f4e41c11d7464166076927ca40921b 100644
--- a/src/mol-geo/util.ts
+++ b/src/mol-geo/util.ts
@@ -8,7 +8,7 @@ import { Vec3, Mat4, Mat3 } from '../mol-math/linear-algebra';
import { NumberArray } from '../mol-util/type-helpers';
import { arrayMax } from '../mol-util/array';
-export function normalizeVec3Array<T extends NumberArray> (a: T, count: number) {
+export function normalizeVec3Array<T extends NumberArray>(a: T, count: number) {
for (let i = 0, il = count * 3; i < il; i += 3) {
const x = a[i];
const y = a[i + 1];
@@ -23,7 +23,7 @@ export function normalizeVec3Array<T extends NumberArray> (a: T, count: number)
const tmpV3 = Vec3();
-export function transformPositionArray (t: Mat4, array: NumberArray, offset: number, count: number) {
+export function transformPositionArray(t: Mat4, array: NumberArray, offset: number, count: number) {
for (let i = 0, il = count * 3; i < il; i += 3) {
Vec3.fromArray(tmpV3, array, offset + i);
Vec3.transformMat4(tmpV3, tmpV3, t);
@@ -31,7 +31,7 @@ export function transformPositionArray (t: Mat4, array: NumberArray, offset: num
}
}
-export function transformDirectionArray (n: Mat3, array: NumberArray, offset: number, count: number) {
+export function transformDirectionArray(n: Mat3, array: NumberArray, offset: number, count: number) {
for (let i = 0, il = count * 3; i < il; i += 3) {
Vec3.fromArray(tmpV3, array, offset + i);
Vec3.transformMat3(tmpV3, tmpV3, n);
@@ -60,7 +60,7 @@ const ab = Vec3();
* http://www.iquilezles.org/www/articles/normals/normals.htm
* - normals array must contain only zeros
*/
-export function computeIndexedVertexNormals<T extends NumberArray> (vertices: NumberArray, indices: NumberArray, normals: T, vertexCount: number, triangleCount: number) {
+export function computeIndexedVertexNormals<T extends NumberArray>(vertices: NumberArray, indices: NumberArray, normals: T, vertexCount: number, triangleCount: number) {
for (let i = 0, il = triangleCount * 3; i < il; i += 3) {
const ai = indices[i] * 3;
@@ -95,7 +95,7 @@ export function computeIndexedVertexNormals<T extends NumberArray> (vertices: Nu
* vertex normals for unindexed triangle soup
* - normals array must contain only zeros
*/
-export function computeVertexNormals<T extends NumberArray> (vertices: NumberArray, normals: T, vertexCount: number) {
+export function computeVertexNormals<T extends NumberArray>(vertices: NumberArray, normals: T, vertexCount: number) {
for (let i = 0, il = vertexCount * 3; i < il; i += 9) {
Vec3.fromArray(a, vertices, i);
Vec3.fromArray(b, vertices, i + 3);
diff --git a/src/mol-geo/util/location-iterator.ts b/src/mol-geo/util/location-iterator.ts
index 1200a22d990c9195fbd2392c5bd9adc1429e7cc4..a0df302c50faf57688e97b7a124074d941c54edb 100644
--- a/src/mol-geo/util/location-iterator.ts
+++ b/src/mol-geo/util/location-iterator.ts
@@ -53,8 +53,8 @@ export function LocationIterator(groupCount: number, instanceCount: number, stri
let voidInstances = false;
return {
- get hasNext () { return hasNext; },
- get isNextNewInstance () { return isNextNewInstance; },
+ get hasNext() { return hasNext; },
+ get isNextNewInstance() { return isNextNewInstance; },
groupCount,
instanceCount,
count: groupCount * instanceCount,
diff --git a/src/mol-gl/_spec/gl.shim.ts b/src/mol-gl/_spec/gl.shim.ts
index 7456e53cb272e4edf1397af21b8762c2e373f7ad..049a3a3e57f9c558413c27adb4de2431ac145571 100644
--- a/src/mol-gl/_spec/gl.shim.ts
+++ b/src/mol-gl/_spec/gl.shim.ts
@@ -335,37 +335,37 @@ export function createGl(width: number, height: number, contextAttributes: WebGL
canvas: {
width, height
} as HTMLCanvasElement,
- getAttachedShaders: function(program: WebGLProgram) {
+ getAttachedShaders: function (program: WebGLProgram) {
return [] as WebGLShader[];
},
- getBufferParameter: function(target: number, pname: number) {
+ getBufferParameter: function (target: number, pname: number) {
return 0;
},
- getContextAttributes: function() { return contextAttributes; },
- getFramebufferAttachmentParameter: function() {},
- getProgramInfoLog: function() { return ''; },
- getShaderInfoLog: function() { return ''; },
- getRenderbufferParameter: function() {},
- getShaderPrecisionFormat: function(shadertype: number, precisiontype: number) {
+ getContextAttributes: function () { return contextAttributes; },
+ getFramebufferAttachmentParameter: function () {},
+ getProgramInfoLog: function () { return ''; },
+ getShaderInfoLog: function () { return ''; },
+ getRenderbufferParameter: function () {},
+ getShaderPrecisionFormat: function (shadertype: number, precisiontype: number) {
return {
precision: 0,
rangeMax: 0,
rangeMin: 0
};
},
- getShaderSource: function(shader: WebGLShader | null) { return ''; },
- getTexParameter: function() {},
- getUniform: function() {},
- getVertexAttrib: function() {},
- getVertexAttribOffset: function(index: number, pname: number) { return 0; },
- hint: function(target: number, mode: number) {},
- isBuffer: function(buffer: WebGLBuffer | null) { return true; },
- isEnabled: function(cap: number) { return true; },
- isFramebuffer: function(framebuffer: WebGLFramebuffer | null) { return true; },
- isProgram: function(program: WebGLProgram | null) { return true; },
- isRenderbuffer: function(renderbuffer: WebGLRenderbuffer | null) { return true; },
- isShader: function(shader: WebGLShader | null) { return true; },
- isTexture: function(texture: WebGLTexture | null) { return true; },
+ getShaderSource: function (shader: WebGLShader | null) { return ''; },
+ getTexParameter: function () {},
+ getUniform: function () {},
+ getVertexAttrib: function () {},
+ getVertexAttribOffset: function (index: number, pname: number) { return 0; },
+ hint: function (target: number, mode: number) {},
+ isBuffer: function (buffer: WebGLBuffer | null) { return true; },
+ isEnabled: function (cap: number) { return true; },
+ isFramebuffer: function (framebuffer: WebGLFramebuffer | null) { return true; },
+ isProgram: function (program: WebGLProgram | null) { return true; },
+ isRenderbuffer: function (renderbuffer: WebGLRenderbuffer | null) { return true; },
+ isShader: function (shader: WebGLShader | null) { return true; },
+ isTexture: function (texture: WebGLTexture | null) { return true; },
getExtension: function (extensionName: string): any {
switch (extensionName) {
case 'EXT_blend_minmax': return {
@@ -386,10 +386,10 @@ export function createGl(width: number, height: number, contextAttributes: WebGL
} as EXT_sRGB;
case 'OES_vertex_array_object': return {
VERTEX_ARRAY_BINDING_OES: 0,
- bindVertexArrayOES: function(arrayObject: WebGLVertexArrayObjectOES) { },
- createVertexArrayOES: function(): WebGLVertexArrayObjectOES { return {}; },
- deleteVertexArrayOES: function(arrayObject: WebGLVertexArrayObjectOES) { },
- isVertexArrayOES: function(value: any) { return true; }
+ bindVertexArrayOES: function (arrayObject: WebGLVertexArrayObjectOES) { },
+ createVertexArrayOES: function (): WebGLVertexArrayObjectOES { return {}; },
+ deleteVertexArrayOES: function (arrayObject: WebGLVertexArrayObjectOES) { },
+ isVertexArrayOES: function (value: any) { return true; }
} as OES_vertex_array_object;
case 'WEBGL_color_buffer_float': return {
FRAMEBUFFER_ATTACHMENT_COMPONENT_TYPE_EXT: 0,
@@ -404,8 +404,8 @@ export function createGl(width: number, height: number, contextAttributes: WebGL
} as WEBGL_debug_shaders;
case 'WEBGL_draw_buffers': return null;
case 'WEBGL_lose_context': return {
- loseContext: function() { },
- restoreContext: function() { },
+ loseContext: function () { },
+ restoreContext: function () { },
} as WEBGL_lose_context;
case 'WEBGL_depth_texture': return {
UNSIGNED_INT_24_8_WEBGL: 0
@@ -426,9 +426,9 @@ export function createGl(width: number, height: number, contextAttributes: WebGL
} as OES_standard_derivatives;
case 'OES_element_index_uint': return {} as OES_element_index_uint;
case 'ANGLE_instanced_arrays': return {
- drawArraysInstancedANGLE: function(mode: number, first: number, count: number, primcount: number) {},
- drawElementsInstancedANGLE: function(mode: number, count: number, type: number, offset: number, primcount: number) {},
- vertexAttribDivisorANGLE: function(index: number, divisor: number) {},
+ drawArraysInstancedANGLE: function (mode: number, first: number, count: number, primcount: number) {},
+ drawElementsInstancedANGLE: function (mode: number, count: number, type: number, offset: number, primcount: number) {},
+ vertexAttribDivisorANGLE: function (index: number, divisor: number) {},
VERTEX_ATTRIB_ARRAY_DIVISOR_ANGLE: 0
} as ANGLE_instanced_arrays;
}
diff --git a/src/mol-gl/renderable/util.ts b/src/mol-gl/renderable/util.ts
index c7317af09a52d2f3f88cd7c384aa0fcb7cb34655..d548d16dbfc2374a16ac9ec539a8ad5aba8c0fba 100644
--- a/src/mol-gl/renderable/util.ts
+++ b/src/mol-gl/renderable/util.ts
@@ -9,7 +9,7 @@ import { Vec3, Mat4 } from '../../mol-math/linear-algebra';
import { BoundaryHelper } from '../../mol-math/geometry/boundary-helper';
import { TextureFilter } from '../webgl/texture';
-export function calculateTextureInfo (n: number, itemSize: number) {
+export function calculateTextureInfo(n: number, itemSize: number) {
n = Math.max(n, 2); // observed issues with 1 pixel textures
const sqN = Math.sqrt(n);
let width = Math.ceil(sqN);
diff --git a/src/mol-gl/webgl/context.ts b/src/mol-gl/webgl/context.ts
index 7d3d3be1f8fd5aa4bd392e4acfb88a3a2b50ecaf..7f255febaeee485d10adbcb2dfad07ddcec33b3a 100644
--- a/src/mol-gl/webgl/context.ts
+++ b/src/mol-gl/webgl/context.ts
@@ -51,7 +51,7 @@ export function checkError(gl: GLRenderingContext) {
}
}
-function unbindResources (gl: GLRenderingContext) {
+function unbindResources(gl: GLRenderingContext) {
// bind null to all texture units
const maxTextureImageUnits = gl.getParameter(gl.MAX_TEXTURE_IMAGE_UNITS);
for (let i = 0; i < maxTextureImageUnits; ++i) {
@@ -280,7 +280,7 @@ export function createContext(gl: GLRenderingContext, props: Partial<{ pixelScal
return {
gl,
isWebGL2: isWebGL2(gl),
- get pixelRatio () {
+ get pixelRatio() {
const dpr = (typeof window !== 'undefined') ? window.devicePixelRatio : 1;
return dpr * (props.pixelScale || 1);
},
@@ -290,17 +290,17 @@ export function createContext(gl: GLRenderingContext, props: Partial<{ pixelScal
stats,
resources,
- get maxTextureSize () { return parameters.maxTextureSize; },
- get max3dTextureSize () { return parameters.max3dTextureSize; },
- get maxRenderbufferSize () { return parameters.maxRenderbufferSize; },
- get maxDrawBuffers () { return parameters.maxDrawBuffers; },
- get maxTextureImageUnits () { return parameters.maxTextureImageUnits; },
+ get maxTextureSize() { return parameters.maxTextureSize; },
+ get max3dTextureSize() { return parameters.max3dTextureSize; },
+ get maxRenderbufferSize() { return parameters.maxRenderbufferSize; },
+ get maxDrawBuffers() { return parameters.maxDrawBuffers; },
+ get maxTextureImageUnits() { return parameters.maxTextureImageUnits; },
namedComputeRenderables: Object.create(null),
namedFramebuffers: Object.create(null),
namedTextures: Object.create(null),
- get isContextLost () {
+ get isContextLost() {
return isContextLost || gl.isContextLost();
},
contextRestored,
diff --git a/src/mol-gl/webgl/renderbuffer.ts b/src/mol-gl/webgl/renderbuffer.ts
index 5b076b84ea282bce36d7c87c157e6763f112999d..857422fda22d433af6071cfe616e0ff4c6631f9d 100644
--- a/src/mol-gl/webgl/renderbuffer.ts
+++ b/src/mol-gl/webgl/renderbuffer.ts
@@ -53,7 +53,7 @@ function getRenderbuffer(gl: GLRenderingContext) {
return renderbuffer;
}
-export function createRenderbuffer (gl: GLRenderingContext, format: RenderbufferFormat, attachment: RenderbufferAttachment, _width: number, _height: number): Renderbuffer {
+export function createRenderbuffer(gl: GLRenderingContext, format: RenderbufferFormat, attachment: RenderbufferAttachment, _width: number, _height: number): Renderbuffer {
let _renderbuffer = getRenderbuffer(gl);
const bind = () => gl.bindRenderbuffer(gl.RENDERBUFFER, _renderbuffer);
diff --git a/src/mol-gl/webgl/texture.ts b/src/mol-gl/webgl/texture.ts
index b309b6fe8b42f1651483e5da7d1bae9029fe8c0d..93f654581a728e1ca1438d219d7b4f43707feab1 100644
--- a/src/mol-gl/webgl/texture.ts
+++ b/src/mol-gl/webgl/texture.ts
@@ -400,7 +400,7 @@ export function createTextures(ctx: WebGLContext, schema: RenderableSchema, valu
*/
export function loadImageTexture(src: string, cell: ValueCell<Texture>, texture: Texture) {
const img = new Image();
- img.onload = function() {
+ img.onload = function () {
texture.load(img);
ValueCell.update(cell, texture);
};
diff --git a/src/mol-gl/webgl/uniform.ts b/src/mol-gl/webgl/uniform.ts
index ef97b2ae3b2e3ba9d140086f489d6d184f160853..446eab858fbcf9a3f051f20afcb9282f2983ec46 100644
--- a/src/mol-gl/webgl/uniform.ts
+++ b/src/mol-gl/webgl/uniform.ts
@@ -45,15 +45,15 @@ export function getUniformType(gl: GLRenderingContext, kind: UniformKind) {
export type UniformSetter = (gl: GLRenderingContext, location: number, value: any) => void
export type UniformSetters = { [k: string]: UniformSetter }
-function uniform1f (gl: GLRenderingContext, location: number, value: any) { gl.uniform1f(location, value); }
-function uniform1fv (gl: GLRenderingContext, location: number, value: any) { gl.uniform1fv(location, value); }
-function uniform1i (gl: GLRenderingContext, location: number, value: any) { gl.uniform1i(location, value); }
-function uniform1iv (gl: GLRenderingContext, location: number, value: any) { gl.uniform1iv(location, value); }
-function uniform2fv (gl: GLRenderingContext, location: number, value: any) { gl.uniform2fv(location, value); }
-function uniform3fv (gl: GLRenderingContext, location: number, value: any) { gl.uniform3fv(location, value); }
-function uniform4fv (gl: GLRenderingContext, location: number, value: any) { gl.uniform4fv(location, value); }
-function uniformMatrix3fv (gl: GLRenderingContext, location: number, value: any) { gl.uniformMatrix3fv(location, false, value); }
-function uniformMatrix4fv (gl: GLRenderingContext, location: number, value: any) { gl.uniformMatrix4fv(location, false, value); }
+function uniform1f(gl: GLRenderingContext, location: number, value: any) { gl.uniform1f(location, value); }
+function uniform1fv(gl: GLRenderingContext, location: number, value: any) { gl.uniform1fv(location, value); }
+function uniform1i(gl: GLRenderingContext, location: number, value: any) { gl.uniform1i(location, value); }
+function uniform1iv(gl: GLRenderingContext, location: number, value: any) { gl.uniform1iv(location, value); }
+function uniform2fv(gl: GLRenderingContext, location: number, value: any) { gl.uniform2fv(location, value); }
+function uniform3fv(gl: GLRenderingContext, location: number, value: any) { gl.uniform3fv(location, value); }
+function uniform4fv(gl: GLRenderingContext, location: number, value: any) { gl.uniform4fv(location, value); }
+function uniformMatrix3fv(gl: GLRenderingContext, location: number, value: any) { gl.uniformMatrix3fv(location, false, value); }
+function uniformMatrix4fv(gl: GLRenderingContext, location: number, value: any) { gl.uniformMatrix4fv(location, false, value); }
function getUniformSetter(kind: UniformKind): UniformSetter {
switch (kind) {
diff --git a/src/mol-io/reader/cif/schema.ts b/src/mol-io/reader/cif/schema.ts
index 44be2a0a9af7450adcae08a57996ec58f344cd92..8a0aaaf2f7dabb730acb2fa79b1509277806661e 100644
--- a/src/mol-io/reader/cif/schema.ts
+++ b/src/mol-io/reader/cif/schema.ts
@@ -131,7 +131,7 @@ class CategoryTable implements Table<any> { // tslint:disable-line:class-name
const cache = Object.create(null);
for (const k of fieldKeys) {
Object.defineProperty(this, k, {
- get: function() {
+ get: function () {
if (cache[k]) return cache[k];
const fType = schema[k];
if (fType.valueType === 'list') {
diff --git a/src/mol-io/reader/common/text/column/token.ts b/src/mol-io/reader/common/text/column/token.ts
index 07233c721b79e113c0100dcd4daeafe0eaacc87a..8f13c8a1ee92a0f4ea511ff5b370d24c4b0a3722 100644
--- a/src/mol-io/reader/common/text/column/token.ts
+++ b/src/mol-io/reader/common/text/column/token.ts
@@ -39,7 +39,7 @@ export function TokenColumn<T extends Column.Schema>(tokens: Tokens, schema: T):
export function areValuesEqualProvider(tokens: Tokens) {
const { data, indices } = tokens;
- return function(rowA: number, rowB: number) {
+ return function (rowA: number, rowB: number) {
const aS = indices[2 * rowA], bS = indices[2 * rowB];
const len = indices[2 * rowA + 1] - aS;
if (len !== indices[2 * rowB + 1] - bS) return false;
diff --git a/src/mol-io/reader/common/text/tokenizer.ts b/src/mol-io/reader/common/text/tokenizer.ts
index 7a5f69518051603cc809e61315a7067234f1e239..b64e8138d70a8124763d4c63f941fc5e78efbaca 100644
--- a/src/mol-io/reader/common/text/tokenizer.ts
+++ b/src/mol-io/reader/common/text/tokenizer.ts
@@ -44,7 +44,7 @@ namespace Tokenizer {
}
/** Resets the state */
- export function reset (state: Tokenizer) {
+ export function reset(state: Tokenizer) {
state.position = 0;
state.lineNumber = 1;
state.tokenStart = 0;
diff --git a/src/mol-io/reader/csv/parser.ts b/src/mol-io/reader/csv/parser.ts
index 8d81cd570cff06ddd1f60909ee5a1f0749d53567..3e6dd115abb8bfe4b0ad6c1fdc2648ae28be47be 100644
--- a/src/mol-io/reader/csv/parser.ts
+++ b/src/mol-io/reader/csv/parser.ts
@@ -233,7 +233,7 @@ function readRecordsChunks(state: State) {
(ctx, state) => ctx.update({ message: 'Parsing...', current: state.tokenizer.position, max: state.data.length }));
}
-function addColumn (state: State) {
+function addColumn(state: State) {
state.columnNames.push(Tokenizer.getTokenString(state.tokenizer));
state.tokens.push(TokenBuilder.create(state.tokenizer.data, state.data.length / 80));
}
diff --git a/src/mol-math/approx.ts b/src/mol-math/approx.ts
index a1d588a6b6fad930bb1da7df3795dd6538df0199..740475b3bba4d13f4141feede6957aed8bdf7e9e 100644
--- a/src/mol-math/approx.ts
+++ b/src/mol-math/approx.ts
@@ -172,14 +172,14 @@ const _a_fasterHalfCos = new ArrayBuffer(4);
const _i_fasterHalfCos = new Int32Array(_a_fasterHalfCos);
const _f_fasterHalfCos = new Float32Array(_a_fasterHalfCos);
-function fasterHalfCos (v: number) {
+function fasterHalfCos(v: number) {
_f_fasterHalfCos[0] = v;
_i_fasterHalfCos[0] &= 0x7FFFFFFF;
const qpprox = 1.0 - twoOverPi * _f_fasterHalfCos[0];
return qpprox + _p_fasterHalfCos * qpprox * (1.0 - qpprox * qpprox);
}
-export function fastTan (v: number) {
+export function fastTan(v: number) {
const k = (v * invTwoPi) | 0;
const half = (v < 0) ? -0.5 : 0.5;
const x = v - (half + k) * twoPi;
diff --git a/src/mol-math/geometry/molecular-surface.ts b/src/mol-math/geometry/molecular-surface.ts
index b3c314e8d5a82de88a29ebd91416257e093f33f3..b361c100b9ee897aad68adf806f539e7123373b1 100644
--- a/src/mol-math/geometry/molecular-surface.ts
+++ b/src/mol-math/geometry/molecular-surface.ts
@@ -17,7 +17,7 @@ import { Box3D, GridLookup3D, fillGridDim } from '../../mol-math/geometry';
import { BaseGeometry } from '../../mol-geo/geometry/base';
import { Boundary } from './boundary';
-function normalToLine (out: Vec3, p: Vec3) {
+function normalToLine(out: Vec3, p: Vec3) {
out[0] = out[1] = out[2] = 1.0;
if (p[0] !== 0) {
out[0] = (p[1] + p[2]) / -p[0];
@@ -30,7 +30,7 @@ function normalToLine (out: Vec3, p: Vec3) {
}
type AnglesTables = { cosTable: Float32Array, sinTable: Float32Array }
-function getAngleTables (probePositions: number): AnglesTables {
+function getAngleTables(probePositions: number): AnglesTables {
let theta = 0.0;
const step = 2 * Math.PI / probePositions;
@@ -112,7 +112,7 @@ export async function calcMolecularSurface(ctx: RuntimeContext, position: Requir
* Calculate delta distance and set grid value to minimum of
* itself and delta
*/
- function projectPointsRange (begI: number, endI: number) {
+ function projectPointsRange(begI: number, endI: number) {
for (let i = begI; i < endI; ++i) {
const j = OrderedSet.getAt(indices, i);
const vx = px[j], vy = py[j], vz = pz[j];
@@ -292,7 +292,7 @@ export async function calcMolecularSurface(ctx: RuntimeContext, position: Requir
}
}
- function projectToriiRange (begI: number, endI: number) {
+ function projectToriiRange(begI: number, endI: number) {
for (let i = begI; i < endI; ++i) {
const k = OrderedSet.getAt(indices, i);
lookup3d.find(px[k], py[k], pz[k], radius[k]);
diff --git a/src/mol-math/interpolate.ts b/src/mol-math/interpolate.ts
index 29c2e1ccae6f44ff198ce18d2acd60b6f603f489..d073ee8e317e5c642a25bb286b20eee5d40087a0 100644
--- a/src/mol-math/interpolate.ts
+++ b/src/mol-math/interpolate.ts
@@ -4,33 +4,33 @@
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
-export function normalize (value: number, min: number, max: number) {
+export function normalize(value: number, min: number, max: number) {
return (value - min) / (max - min);
}
-export function clamp (value: number, min: number, max: number) {
+export function clamp(value: number, min: number, max: number) {
return Math.max(min, Math.min(max, value));
}
-export function pclamp (value: number) {
+export function pclamp(value: number) {
return clamp(value, 0, 100);
}
-export function saturate (value: number) {
+export function saturate(value: number) {
return clamp(value, 0, 1);
}
-export function damp (value: number, dampingFactor: number) {
+export function damp(value: number, dampingFactor: number) {
const dampedValue = value * dampingFactor;
return Math.abs(dampedValue) < 0.1 ? 0 : dampedValue;
}
-export function lerp (start: number, stop: number, alpha: number) {
+export function lerp(start: number, stop: number, alpha: number) {
return start + (stop - start) * alpha;
}
/** Catmul-Rom spline */
-export function spline (p0: number, p1: number, p2: number, p3: number, t: number, tension: number) {
+export function spline(p0: number, p1: number, p2: number, p3: number, t: number, tension: number) {
const v0 = (p2 - p0) * tension;
const v1 = (p3 - p1) * tension;
const t2 = t * t;
@@ -43,22 +43,22 @@ export function quadraticBezier(p0: number, p1: number, p2: number, t: number) {
return (k * k * p0) + (2 * k * t * p1) + (t * t * p2);
}
-export function smoothstep (min: number, max: number, x: number) {
+export function smoothstep(min: number, max: number, x: number) {
x = saturate(normalize(x, min, max));
return x * x * (3 - 2 * x);
}
-export function smootherstep (min: number, max: number, x: number) {
+export function smootherstep(min: number, max: number, x: number) {
x = saturate(normalize(x, min, max));
return x * x * x * (x * (x * 6 - 15) + 10);
}
-export function smootheststep (min: number, max: number, x: number) {
+export function smootheststep(min: number, max: number, x: number) {
x = saturate(normalize(x, min, max));
return -20 * Math.pow(x, 7) + 70 * Math.pow(x, 6) - 84 * Math.pow(x, 5) + 35 * Math.pow(x, 4);
}
-export function almostIdentity (value: number, start: number, stop: number) {
+export function almostIdentity(value: number, start: number, stop: number) {
if (value > start) return value;
const a = 2 * stop - start;
const b = 2 * start - 3 * stop;
diff --git a/src/mol-math/linear-algebra/3d/quat.ts b/src/mol-math/linear-algebra/3d/quat.ts
index e0c9ca342b62dc31e89e1d50581c4dc57cb9dc98..a3d754d540863df4d8d6f0d0a6de0983fc91c057 100644
--- a/src/mol-math/linear-algebra/3d/quat.ts
+++ b/src/mol-math/linear-algebra/3d/quat.ts
@@ -279,7 +279,7 @@ namespace Quat {
const fromUnitVec3Temp = [0, 0, 0] as Vec3;
/** Quaternion from two normalized unit vectors. */
- export function fromUnitVec3 (out: Quat, a: Vec3, b: Vec3) {
+ export function fromUnitVec3(out: Quat, a: Vec3, b: Vec3) {
// assumes a and b are normalized
let r = Vec3.dot(a, b) + 1;
if (r < EPSILON) {
diff --git a/src/mol-math/misc.ts b/src/mol-math/misc.ts
index cecbf2d51d912e82b1b71c098ae15a42b1d0ac41..c275e02b65370cc3a5dc7fd576f16e62d2c7f788 100644
--- a/src/mol-math/misc.ts
+++ b/src/mol-math/misc.ts
@@ -7,15 +7,15 @@
export const halfPI = Math.PI / 2;
export const PiDiv180 = Math.PI / 180;
-export function degToRad (deg: number) {
+export function degToRad(deg: number) {
return deg * PiDiv180; // deg * Math.PI / 180
}
-export function radToDeg (rad: number) {
+export function radToDeg(rad: number) {
return rad / PiDiv180; // rad * 180 / Math.PI
}
-export function isPowerOfTwo (x: number) {
+export function isPowerOfTwo(x: number) {
return (x !== 0) && (x & (x - 1)) === 0;
}
diff --git a/src/mol-model-formats/structure/common/component.ts b/src/mol-model-formats/structure/common/component.ts
index 49c7df64253db61c041fd7d4fcc619c510bd3e48..dfa708dfa8b7e3b8abf56763e788b23c2903118b 100644
--- a/src/mol-model-formats/structure/common/component.ts
+++ b/src/mol-model-formats/structure/common/component.ts
@@ -33,7 +33,7 @@ const NonPolymerNames = new Set([
'FMN', 'NCN', 'FNS', 'FMA' // Mononucleotides
]);
-const StandardComponents = (function() {
+const StandardComponents = (function () {
const map = new Map<string, Component>();
const components: Component[] = [
{ id: 'HIS', name: 'HISTIDINE', type: 'L-peptide linking' },
@@ -83,7 +83,7 @@ const StandardComponents = (function() {
return map;
})();
-const CharmmIonComponents = (function() {
+const CharmmIonComponents = (function () {
const map = new Map<string, Component>();
const components: Component[] = [
{ id: 'ZN2', name: 'ZINC ION', type: 'Ion' },
@@ -126,7 +126,7 @@ export class ComponentBuilder {
return atomIds;
}
- private hasAtomIds (atomIds: Set<string>, atomIdsList: Set<string>[]) {
+ private hasAtomIds(atomIds: Set<string>, atomIdsList: Set<string>[]) {
for (let i = 0, il = atomIdsList.length; i < il; ++i) {
if (!SetUtils.areIntersecting(atomIds, atomIdsList[i])) {
return false;
diff --git a/src/mol-model-formats/structure/common/util.ts b/src/mol-model-formats/structure/common/util.ts
index 788a1e8cbe50123ce60b1eb7ef029ddf514c55ff..22fc7b4990f78090c01faa2bd73193952ae81930 100644
--- a/src/mol-model-formats/structure/common/util.ts
+++ b/src/mol-model-formats/structure/common/util.ts
@@ -8,7 +8,7 @@ import { memoize1 } from '../../../mol-util/memoize';
const ChainIdAlphabet = 'ABCDEFGHIJKLMNOPQRSTUVWXYZ';
-function _getChainId (index: number) {
+function _getChainId(index: number) {
const n = ChainIdAlphabet.length;
let j = index;
let k = 0;
diff --git a/src/mol-model-props/computed/chemistry/functional-group.ts b/src/mol-model-props/computed/chemistry/functional-group.ts
index 962e0400008cff46057921aaa7e45a2912e290d8..30bca2c610803a0f792d5cc8e50c1a80b68314b4 100644
--- a/src/mol-model-props/computed/chemistry/functional-group.ts
+++ b/src/mol-model-props/computed/chemistry/functional-group.ts
@@ -111,7 +111,7 @@ export function isSulfate(structure: Structure, unit: Unit.Atomic, index: Struct
/**
* Phosphor in a phosphate group
*/
-export function isPhosphate (structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
+export function isPhosphate(structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
return (
typeSymbol(unit, index) === Elements.P &&
bondToElementCount(structure, unit, index, Elements.O) === bondCount(structure, unit, index)
@@ -121,7 +121,7 @@ export function isPhosphate (structure: Structure, unit: Unit.Atomic, index: Str
/**
* Halogen with one bond to a carbon
*/
-export function isHalocarbon (structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
+export function isHalocarbon(structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
return (
isHalogen(typeSymbol(unit, index)) &&
bondCount(structure, unit, index) === 1 &&
@@ -151,7 +151,7 @@ export function isCarbonyl(structure: Structure, unit: Unit.Atomic, index: Struc
/**
* Carbon in a carboxylate group
*/
-export function isCarboxylate (structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
+export function isCarboxylate(structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
let terminalOxygenCount = 0;
if (
typeSymbol(unit, index) === Elements.C &&
@@ -173,7 +173,7 @@ export function isCarboxylate (structure: Structure, unit: Unit.Atomic, index: S
/**
* Carbon in a guanidine group
*/
-export function isGuanidine (structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
+export function isGuanidine(structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
let terminalNitrogenCount = 0;
if (
typeSymbol(unit, index) === Elements.C &&
@@ -194,7 +194,7 @@ export function isGuanidine (structure: Structure, unit: Unit.Atomic, index: Str
/**
* Carbon in a acetamidine group
*/
-export function isAcetamidine (structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
+export function isAcetamidine(structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
let terminalNitrogenCount = 0;
if (
typeSymbol(unit, index) === Elements.C &&
@@ -216,7 +216,7 @@ export function isAcetamidine (structure: Structure, unit: Unit.Atomic, index: S
const PolarElements = new Set<ElementSymbol>(['N', 'O', 'S', 'F', 'CL', 'BR', 'I'] as ElementSymbol[]);
export function isPolar(element: ElementSymbol) { return PolarElements.has(element); }
-export function hasPolarNeighbour (structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
+export function hasPolarNeighbour(structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
let flag = false;
eachBondedAtom(structure, unit, index, (unit: Unit.Atomic, index: StructureElement.UnitIndex) => {
if (isPolar(typeSymbol(unit, index))) flag = true;
@@ -224,7 +224,7 @@ export function hasPolarNeighbour (structure: Structure, unit: Unit.Atomic, inde
return flag;
}
-export function hasAromaticNeighbour (structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
+export function hasAromaticNeighbour(structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
let flag = false;
eachBondedAtom(structure, unit, index, (unit: Unit.Atomic, index: StructureElement.UnitIndex) => {
if (isAromatic(unit, index)) flag = true;
diff --git a/src/mol-model-props/computed/chemistry/geometry.ts b/src/mol-model-props/computed/chemistry/geometry.ts
index 8f4ac189140fac81cb6e9c6fca0fdccc200f9b78..5caa0b2e993e4e484bbef28fb08c4403ecb3c2b5 100644
--- a/src/mol-model-props/computed/chemistry/geometry.ts
+++ b/src/mol-model-props/computed/chemistry/geometry.ts
@@ -50,7 +50,7 @@ export function geometryLabel(geometry: AtomGeometry): string {
}
}
-export function assignGeometry (totalCoordination: number): AtomGeometry {
+export function assignGeometry(totalCoordination: number): AtomGeometry {
switch (totalCoordination) {
case 0: return AtomGeometry.Spherical;
case 1: return AtomGeometry.Terminal;
@@ -79,7 +79,7 @@ const tmpPosX = Vec3();
/**
* Calculate the angles x-a1-a2 for all x where x is a heavy atom (not H) bonded to ap1.
*/
-export function calcAngles (structure: Structure, unitA: Unit.Atomic, indexA: StructureElement.UnitIndex, unitB: Unit.Atomic, indexB: StructureElement.UnitIndex): number[] {
+export function calcAngles(structure: Structure, unitA: Unit.Atomic, indexA: StructureElement.UnitIndex, unitB: Unit.Atomic, indexB: StructureElement.UnitIndex): number[] {
const angles: number[] = [];
unitA.conformation.position(unitA.elements[indexA], tmpPosA);
unitB.conformation.position(unitB.elements[indexB], tmpPosB);
@@ -102,7 +102,7 @@ export function calcAngles (structure: Structure, unitA: Unit.Atomic, indexA: St
* @param {AtomProxy} ap2 Second atom (out-of-plane)
* @return {number} Angle from plane to second atom
*/
-export function calcPlaneAngle (structure: Structure, unitA: Unit.Atomic, indexA: StructureElement.UnitIndex, unitB: Unit.Atomic, indexB: StructureElement.UnitIndex): number | undefined {
+export function calcPlaneAngle(structure: Structure, unitA: Unit.Atomic, indexA: StructureElement.UnitIndex, unitB: Unit.Atomic, indexB: StructureElement.UnitIndex): number | undefined {
unitA.conformation.position(unitA.elements[indexA], tmpPosA);
unitB.conformation.position(unitB.elements[indexB], tmpPosB);
Vec3.sub(tmpDir1, tmpPosB, tmpPosA);
diff --git a/src/mol-model-props/computed/chemistry/valence-model.ts b/src/mol-model-props/computed/chemistry/valence-model.ts
index b8991ef8d38d547dfbb1182cb5649e1c97481471..b84d9547780b6af295a40d955540176084f20204 100644
--- a/src/mol-model-props/computed/chemistry/valence-model.ts
+++ b/src/mol-model-props/computed/chemistry/valence-model.ts
@@ -36,7 +36,7 @@ const tmpConjBondItB = new Bond.ElementBondIterator();
* N,O with degree 4 cannot be conjugated.
* N,O adjacent to P=O or S=O do not qualify (keeps sulfonamide N sp3 geom)
*/
-function isConjugated (structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
+function isConjugated(structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
const element = typeSymbol(unit, index);
const hetero = element === Elements.O || element === Elements.N;
@@ -65,7 +65,7 @@ function isConjugated (structure: Structure, unit: Unit.Atomic, index: Structure
return false;
}
-export function explicitValence (structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
+export function explicitValence(structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex) {
let v = 0;
// intra-unit bonds
const { offset, edgeProps: { flags, order } } = unit.bonds;
@@ -94,7 +94,7 @@ const tmpChargeBondItB = new Bond.ElementBondIterator();
* If only charge or hydrogens are to be assigned it takes
* a much simpler view and deduces one from the other
*/
-export function calculateHydrogensCharge (structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex, props: ValenceModelProps) {
+export function calculateHydrogensCharge(structure: Structure, unit: Unit.Atomic, index: StructureElement.UnitIndex, props: ValenceModelProps) {
const hydrogenCount = bondToElementCount(structure, unit, index, Elements.H);
const element = typeSymbol(unit, index);
let charge = formalCharge(unit, index);
diff --git a/src/mol-model/sequence/alignment/alignment.ts b/src/mol-model/sequence/alignment/alignment.ts
index 55c3fcc51454705dd5a0358887ea3f2d84e1e245..a0fb519ab095a0e3789722d2dd09e5c059d30c7e 100644
--- a/src/mol-model/sequence/alignment/alignment.ts
+++ b/src/mol-model/sequence/alignment/alignment.ts
@@ -27,7 +27,7 @@ class Alignment {
readonly n: number; readonly m: number
readonly S: number[][] = []; readonly V: number[][] = []; readonly H: number[][] = []
- constructor (readonly seqA: ArrayLike<string>, readonly seqB: ArrayLike<string>, options: AlignmentOptions) {
+ constructor(readonly seqA: ArrayLike<string>, readonly seqB: ArrayLike<string>, options: AlignmentOptions) {
this.gapPenalty = options.gapPenalty;
this.gapExtensionPenalty = options.gapExtensionPenalty;
this.substMatrix = options.substMatrix === 'default' ? undefined : SubstitutionMatrices[options.substMatrix];
@@ -36,7 +36,7 @@ class Alignment {
this.m = this.seqB.length;
}
- private initMatrices () {
+ private initMatrices() {
const { n, m, gapPenalty, S, V, H } = this;
for (let i = 0; i <= n; ++i) {
@@ -60,17 +60,17 @@ class Alignment {
S[0][0] = 0;
}
- private makeScoreFn () {
+ private makeScoreFn() {
const { seqA, seqB, substMatrix } = this;
if (substMatrix) {
- return function score (i: number, j: number) {
+ return function score(i: number, j: number) {
const cA = seqA[i];
const cB = seqB[j];
return substMatrix[cA]?.[cB] ?? -4;
};
} else {
- return function scoreNoSubstMat (i: number, j: number) {
+ return function scoreNoSubstMat(i: number, j: number) {
const cA = seqA[i];
const cB = seqB[j];
return cA === cB ? 5 : -3;
@@ -78,7 +78,7 @@ class Alignment {
}
}
- calculate () {
+ calculate() {
this.initMatrices();
const scoreFn = this.makeScoreFn();
@@ -109,7 +109,7 @@ class Alignment {
}
}
- trace (): { aliA: ArrayLike<string>, aliB: ArrayLike<string>, score: number } {
+ trace(): { aliA: ArrayLike<string>, aliB: ArrayLike<string>, score: number } {
const scoreFn = this.makeScoreFn();
const { V, H, S, seqA, seqB, gapExtensionPenalty, gapPenalty } = this;
diff --git a/src/mol-model/sequence/alignment/substitution-matrix.ts b/src/mol-model/sequence/alignment/substitution-matrix.ts
index 21f4a2c851938f24e56885c074409cc42b1a0c64..b81612ca95a5d886c2461bbf24f1dd7229dad049 100644
--- a/src/mol-model/sequence/alignment/substitution-matrix.ts
+++ b/src/mol-model/sequence/alignment/substitution-matrix.ts
@@ -61,7 +61,7 @@ const blosum62 = [
export type SubstitutionMatrixData = Readonly<{ [k: string]: Readonly<{ [k: string]: number }> }>;
-function prepareMatrix (cellNames: string, mat: number[][]): SubstitutionMatrixData {
+function prepareMatrix(cellNames: string, mat: number[][]): SubstitutionMatrixData {
let j: number;
let i = 0;
const matDict: Mutable<SubstitutionMatrixData> = {};
diff --git a/src/mol-model/structure/model/properties/atomic/bonds.ts b/src/mol-model/structure/model/properties/atomic/bonds.ts
index f8ad9b974cc56dee237ae93ad5945e80efaf0be4..4dbda0b4c2b81bc84eb598621fe3aa251f9c46e9 100644
--- a/src/mol-model/structure/model/properties/atomic/bonds.ts
+++ b/src/mol-model/structure/model/properties/atomic/bonds.ts
@@ -63,7 +63,7 @@ const IntraBondOrderTable = new Map([
/**
* Get order for bonds in aminoacids and nucleotides assuming standard IUPAC naming
*/
-export function getIntraBondOrderFromTable (compId: string, atomId1: string, atomId2: string) {
+export function getIntraBondOrderFromTable(compId: string, atomId1: string, atomId2: string) {
[atomId1, atomId2] = atomId1 < atomId2 ? [atomId1, atomId2] : [atomId2, atomId1];
if (AminoAcidNames.has(compId) && atomId1 === 'C' && atomId2 === 'O') return 2;
if (BaseNames.has(compId) && atomId1 === 'OP1' && atomId2 === 'P') return 2;
@@ -81,7 +81,7 @@ const InterBondOrderTable = new Map([
/**
* Get order for bonds between component assuming PDBx/mmCIF naming.
*/
-export function getInterBondOrderFromTable (compId1: string, atomId1: string, compId2: string, atomId2: string) {
+export function getInterBondOrderFromTable(compId1: string, atomId1: string, compId2: string, atomId2: string) {
if (compId1 > compId2) {
[compId1, compId2] = [compId2, compId1];
[atomId1, atomId2] = [atomId2, atomId1];
diff --git a/src/mol-model/structure/model/properties/atomic/types.ts b/src/mol-model/structure/model/properties/atomic/types.ts
index 2b5855a4dbbd218c070d78f513a20b2d1bd36d2d..423dbd0c2287f15a75ba2fcd3384e8d21d82fda1 100644
--- a/src/mol-model/structure/model/properties/atomic/types.ts
+++ b/src/mol-model/structure/model/properties/atomic/types.ts
@@ -52,12 +52,12 @@ export function isTransitionMetal(element: ElementSymbol) {
);
}
-export function isLanthanide (element: ElementSymbol) {
+export function isLanthanide(element: ElementSymbol) {
const no = AtomNumber(element);
return no >= 57 && no <= 71;
}
-export function isActinide (element: ElementSymbol) {
+export function isActinide(element: ElementSymbol) {
const no = AtomNumber(element);
return no >= 89 && no <= 103;
}
diff --git a/src/mol-model/structure/structure/carbohydrates/compute.ts b/src/mol-model/structure/structure/carbohydrates/compute.ts
index c788e20939735652bc88bcc9e1ec7de933fb4800..20949907ab2b3a92d602121b0b429571d27e049a 100644
--- a/src/mol-model/structure/structure/carbohydrates/compute.ts
+++ b/src/mol-model/structure/structure/carbohydrates/compute.ts
@@ -324,7 +324,7 @@ export function computeCarbohydrates(structure: Structure): Carbohydrates {
return { links, terminalLinks, elements, partialElements, ...buildLookups(elements, links, terminalLinks) };
}
-function buildLookups (elements: CarbohydrateElement[], links: CarbohydrateLink[], terminalLinks: CarbohydrateTerminalLink[]) {
+function buildLookups(elements: CarbohydrateElement[], links: CarbohydrateLink[], terminalLinks: CarbohydrateTerminalLink[]) {
function key(unit: Unit, element: ElementIndex) {
return cantorPairing(unit.id, element);
diff --git a/src/mol-model/structure/structure/unit.ts b/src/mol-model/structure/structure/unit.ts
index 31c56a90592a8172aa2a9af5147038f49d8926e5..c68322ec210bc4674c196888f0596ebdff4780f1 100644
--- a/src/mol-model/structure/structure/unit.ts
+++ b/src/mol-model/structure/structure/unit.ts
@@ -84,7 +84,7 @@ namespace Unit {
return {
elements: units[0].elements,
units,
- get unitIndexMap () {
+ get unitIndexMap() {
if (props.unitIndexMap) return props.unitIndexMap;
props.unitIndexMap = getUnitIndexMap(units);
return props.unitIndexMap;
@@ -112,7 +112,7 @@ namespace Unit {
}
}
- export function conformationId (unit: Unit) {
+ export function conformationId(unit: Unit) {
return Unit.isAtomic(unit) ? unit.model.atomicConformation.id : unit.model.coarseConformation.id;
}
diff --git a/src/mol-plugin/behavior/dynamic/volume-streaming/behavior.ts b/src/mol-plugin/behavior/dynamic/volume-streaming/behavior.ts
index 2597e1c10276b254fab6e4df25147eb33d76a1b1..c145b6d91f7aa8e775f8d0e6d8aaa1729c5ae10d 100644
--- a/src/mol-plugin/behavior/dynamic/volume-streaming/behavior.ts
+++ b/src/mol-plugin/behavior/dynamic/volume-streaming/behavior.ts
@@ -143,7 +143,7 @@ export namespace VolumeStreaming {
channels: Channels = {}
- public get info () {
+ public get info() {
return this.infoMap.get(this.params.entry.name)!;
}
diff --git a/src/mol-repr/shape/representation.ts b/src/mol-repr/shape/representation.ts
index 28e58c0039b27cf2b42c478171beec8e5371f3ff..af0b769ee5ed459d6d1fc4448de2361c90f406f0 100644
--- a/src/mol-repr/shape/representation.ts
+++ b/src/mol-repr/shape/representation.ts
@@ -172,9 +172,9 @@ export function ShapeRepresentation<D, G extends Geometry, P extends Geometry.Pa
return {
label: 'Shape geometry',
- get groupCount () { return locationIt ? locationIt.count : 0; },
- get props () { return currentProps; },
- get params () { return currentParams; },
+ get groupCount() { return locationIt ? locationIt.count : 0; },
+ get props() { return currentProps; },
+ get params() { return currentParams; },
get state() { return _state; },
get theme() { return _theme; },
renderObjects,
diff --git a/src/mol-repr/structure/complex-visual.ts b/src/mol-repr/structure/complex-visual.ts
index 8f503ace41d9dd8bb1dfafdea68a19a9d14b2041..f6cdff35be3ab6b06f7d9260706259501b5e94df 100644
--- a/src/mol-repr/structure/complex-visual.ts
+++ b/src/mol-repr/structure/complex-visual.ts
@@ -215,7 +215,7 @@ export function ComplexVisual<G extends Geometry, P extends StructureParams & Ge
return {
get groupCount() { return locationIt ? locationIt.count : 0; },
- get renderObject () { return locationIt && locationIt.count ? renderObject : undefined; },
+ get renderObject() { return locationIt && locationIt.count ? renderObject : undefined; },
createOrUpdate(ctx: VisualContext, theme: Theme, props: Partial<PD.Values<P>> = {}, structure?: Structure) {
prepareUpdate(theme, props, structure || currentStructure);
if (updateState.createGeometry) {
diff --git a/src/mol-repr/structure/units-visual.ts b/src/mol-repr/structure/units-visual.ts
index e4105f9eb16589aefee9e2e547f7a5a3f2e38c67..bf21764f34a077d9fdaf200a5a3536ae432f3270 100644
--- a/src/mol-repr/structure/units-visual.ts
+++ b/src/mol-repr/structure/units-visual.ts
@@ -269,7 +269,7 @@ export function UnitsVisual<G extends Geometry, P extends StructureParams & Geom
return {
get groupCount() { return locationIt ? locationIt.count : 0; },
- get renderObject () { return locationIt && locationIt.count ? renderObject : undefined; },
+ get renderObject() { return locationIt && locationIt.count ? renderObject : undefined; },
createOrUpdate(ctx: VisualContext, theme: Theme, props: PD.Values<P>, structureGroup?: StructureGroup) {
prepareUpdate(theme, props, structureGroup || currentStructureGroup);
if (updateState.createGeometry) {
diff --git a/src/mol-repr/structure/visual/carbohydrate-symbol-mesh.ts b/src/mol-repr/structure/visual/carbohydrate-symbol-mesh.ts
index 6fc6a0be74b0a0d64539734d6c381f8b83e9159c..8c56b96b7ef54de11291b0f57982c3ea53e9742b 100644
--- a/src/mol-repr/structure/visual/carbohydrate-symbol-mesh.ts
+++ b/src/mol-repr/structure/visual/carbohydrate-symbol-mesh.ts
@@ -189,14 +189,14 @@ function CarbohydrateElementIterator(structure: Structure): LocationIterator {
const groupCount = carbElements.length * 2;
const instanceCount = 1;
const location = StructureElement.Location.create(structure);
- function getLocation (groupIndex: number, instanceIndex: number) {
+ function getLocation(groupIndex: number, instanceIndex: number) {
const carb = carbElements[Math.floor(groupIndex / 2)];
const ring = carb.unit.rings.all[carb.ringIndex];
location.unit = carb.unit;
location.element = carb.unit.elements[ring[0]];
return location;
}
- function isSecondary (elementIndex: number, instanceIndex: number) {
+ function isSecondary(elementIndex: number, instanceIndex: number) {
return (elementIndex % 2) === 1;
}
return LocationIterator(groupCount, instanceCount, 1, getLocation, true, isSecondary);
diff --git a/src/mol-repr/structure/visual/polymer-backbone-cylinder.ts b/src/mol-repr/structure/visual/polymer-backbone-cylinder.ts
index 249f55348882aba67983268c023bc8733276564a..c740ea4828c8a2ba584eb98e14c31c39d0d90c20 100644
--- a/src/mol-repr/structure/visual/polymer-backbone-cylinder.ts
+++ b/src/mol-repr/structure/visual/polymer-backbone-cylinder.ts
@@ -62,7 +62,7 @@ function createPolymerBackboneCylinderImpostor(ctx: VisualContext, unit: Unit, s
const pB = Vec3();
const pM = Vec3();
- const add = function(indexA: ElementIndex, indexB: ElementIndex, groupA: number, groupB: number, moleculeType: MoleculeType) {
+ const add = function (indexA: ElementIndex, indexB: ElementIndex, groupA: number, groupB: number, moleculeType: MoleculeType) {
pos(indexA, pA);
pos(indexB, pB);
@@ -115,7 +115,7 @@ function createPolymerBackboneCylinderMesh(ctx: VisualContext, unit: Unit, struc
const centerA = StructureElement.Location.create(structure, unit);
const centerB = StructureElement.Location.create(structure, unit);
- const add = function(indexA: ElementIndex, indexB: ElementIndex, groupA: number, groupB: number, moleculeType: MoleculeType) {
+ const add = function (indexA: ElementIndex, indexB: ElementIndex, groupA: number, groupB: number, moleculeType: MoleculeType) {
centerA.element = indexA;
centerB.element = indexB;
diff --git a/src/mol-repr/structure/visual/util/link.ts b/src/mol-repr/structure/visual/util/link.ts
index a91dfb9becd5394da8a95c93c0f19c6d5107c881..5d6f7d2a44ded649d6e88c702eaf52fedb3bbf0c 100644
--- a/src/mol-repr/structure/visual/util/link.ts
+++ b/src/mol-repr/structure/visual/util/link.ts
@@ -44,7 +44,7 @@ const tmpShiftV13 = Vec3();
const up = Vec3.create(0, 1, 0);
/** Calculate 'shift' direction that is perpendiculat to v1 - v2 and goes through v3 */
-export function calculateShiftDir (out: Vec3, v1: Vec3, v2: Vec3, v3: Vec3 | null) {
+export function calculateShiftDir(out: Vec3, v1: Vec3, v2: Vec3, v3: Vec3 | null) {
Vec3.normalize(tmpShiftV12, Vec3.sub(tmpShiftV12, v1, v2));
if (v3 !== null) {
Vec3.sub(tmpShiftV13, v1, v3);
diff --git a/src/mol-repr/structure/visual/util/polymer/gap-iterator.ts b/src/mol-repr/structure/visual/util/polymer/gap-iterator.ts
index 5b14b75c8345bbed168983240616525c281e8679..8f12043739bf7d631093fe94aa42710f992577f4 100644
--- a/src/mol-repr/structure/visual/util/polymer/gap-iterator.ts
+++ b/src/mol-repr/structure/visual/util/polymer/gap-iterator.ts
@@ -24,7 +24,7 @@ interface PolymerGapPair {
centerB: StructureElement.Location
}
-function createPolymerGapPair (structure: Structure, unit: Unit) {
+function createPolymerGapPair(structure: Structure, unit: Unit) {
return {
centerA: StructureElement.Location.create(structure, unit),
centerB: StructureElement.Location.create(structure, unit),
diff --git a/src/mol-repr/structure/visual/util/polymer/trace-iterator.ts b/src/mol-repr/structure/visual/util/polymer/trace-iterator.ts
index 45606c094860f316f2e8bc99be2d82d6e4f94001..d8561b58fcc16aab13ea2e61071006e5a4154d57 100644
--- a/src/mol-repr/structure/visual/util/polymer/trace-iterator.ts
+++ b/src/mol-repr/structure/visual/util/polymer/trace-iterator.ts
@@ -63,7 +63,7 @@ interface PolymerTraceElement {
const SecStrucTypeNA = SecondaryStructureType.create(SecondaryStructureType.Flag.NA);
-function createPolymerTraceElement (structure: Structure, unit: Unit): PolymerTraceElement {
+function createPolymerTraceElement(structure: Structure, unit: Unit): PolymerTraceElement {
return {
center: StructureElement.Location.create(structure, unit),
centerPrev: StructureElement.Location.create(structure, unit),
diff --git a/src/mol-repr/volume/representation.ts b/src/mol-repr/volume/representation.ts
index 5591c176ac268af960f155404d09b852ea53ae75..3d0f7ca0e9f44c3739b20cdfd56697c371c77009 100644
--- a/src/mol-repr/volume/representation.ts
+++ b/src/mol-repr/volume/representation.ts
@@ -169,7 +169,7 @@ export function VolumeVisual<G extends Geometry, P extends VolumeParams & Geomet
return {
get groupCount() { return locationIt ? locationIt.count : 0; },
- get renderObject () { return renderObject; },
+ get renderObject() { return renderObject; },
async createOrUpdate(ctx: VisualContext, theme: Theme, props: Partial<PD.Values<P>> = {}, volume?: Volume) {
prepareUpdate(theme, props, volume || currentVolume);
if (updateState.createGeometry) {
@@ -300,7 +300,7 @@ export function VolumeRepresentation<P extends VolumeParams>(label: string, ctx:
get groupCount() {
return visual ? visual.groupCount : 0;
},
- get props () { return _props; },
+ get props() { return _props; },
get params() { return _params; },
get state() { return _state; },
get theme() { return _theme; },
diff --git a/src/mol-script/language/symbol-table.ts b/src/mol-script/language/symbol-table.ts
index 9d50226077988ebceac50468d6572ec7198245c6..357c99bc008e2f3836e969f5a2254ba123abaaf3 100644
--- a/src/mol-script/language/symbol-table.ts
+++ b/src/mol-script/language/symbol-table.ts
@@ -16,7 +16,7 @@ normalizeTable(MolScriptSymbolTable);
export const SymbolList = symbolList(MolScriptSymbolTable);
-export const SymbolMap = (function() {
+export const SymbolMap = (function () {
const map: { [id: string]: MSymbol | undefined } = Object.create(null);
for (const s of SymbolList) map[s.id] = s;
return map;
diff --git a/src/mol-script/language/symbol-table/core.ts b/src/mol-script/language/symbol-table/core.ts
index 6096b36b5a7ee0e75c0a130c018809e43c868a84..4661b69bc8305d6f71b91a66fea91a087b1b1800 100644
--- a/src/mol-script/language/symbol-table/core.ts
+++ b/src/mol-script/language/symbol-table/core.ts
@@ -184,7 +184,7 @@ normalizeTable(core);
export const SymbolList = symbolList(core);
-export const SymbolMap = (function() {
+export const SymbolMap = (function () {
const map: { [id: string]: MSymbol | undefined } = Object.create(null);
for (const s of SymbolList) map[s.id] = s;
return map;
diff --git a/src/mol-script/language/symbol.ts b/src/mol-script/language/symbol.ts
index ad8ef7e87bb4c273d91f517eb4f80f55ac2a06b4..3694880c9cf1419c5b6f7cfe9272a9f82dba90b0 100644
--- a/src/mol-script/language/symbol.ts
+++ b/src/mol-script/language/symbol.ts
@@ -64,7 +64,7 @@ export interface MSymbol<A extends Arguments = Arguments, T extends Type = Type>
}
export function MSymbol<A extends Arguments, T extends Type>(name: string, args: A, type: T, description?: string) {
- const symbol: MSymbol<A, T> = function(args: ExpressionArguments<A['@type']>) {
+ const symbol: MSymbol<A, T> = function (args: ExpressionArguments<A['@type']>) {
return Expression.Apply(Expression.Symbol(symbol.id), args as any);
} as any;
symbol.info = { namespace: '', name, description };
@@ -75,7 +75,7 @@ export function MSymbol<A extends Arguments, T extends Type>(name: string, args:
}
export function CustomPropSymbol<T extends Type>(namespace: string, name: string, type: T, description?: string) {
- const symbol: MSymbol<Arguments<{}>, T> = function(args: ExpressionArguments<Arguments<{}>['@type']>) {
+ const symbol: MSymbol<Arguments<{}>, T> = function (args: ExpressionArguments<Arguments<{}>['@type']>) {
return Expression.Apply(Expression.Symbol(symbol.id), args as any);
} as any;
symbol.info = { namespace, name, description };
diff --git a/src/mol-task/util/scheduler.ts b/src/mol-task/util/scheduler.ts
index 065379501206bd2a2012469d488b4e52c080bec8..346d15f8701a9ff1a8ab55de7b4545a6df82846c 100644
--- a/src/mol-task/util/scheduler.ts
+++ b/src/mol-task/util/scheduler.ts
@@ -73,7 +73,7 @@ function createImmediateActions() {
}
function installNextTickImplementation() {
- registerImmediate = function(handle) {
+ registerImmediate = function (handle) {
process.nextTick(function () { runIfPresent(handle); });
};
}
@@ -82,7 +82,7 @@ function createImmediateActions() {
if (global && global.postMessage && !global.importScripts) {
let postMessageIsAsynchronous = true;
const oldOnMessage = global.onmessage;
- global.onmessage = function() {
+ global.onmessage = function () {
postMessageIsAsynchronous = false;
};
global.postMessage('', '*');
@@ -97,7 +97,7 @@ function createImmediateActions() {
// * http://www.whatwg.org/specs/web-apps/current-work/multipage/comms.html#crossDocumentMessages
const messagePrefix = 'setImmediate$' + Math.random() + '$';
- const onGlobalMessage = function(event: any) {
+ const onGlobalMessage = function (event: any) {
if (event.source === global &&
typeof event.data === 'string' &&
event.data.indexOf(messagePrefix) === 0) {
@@ -111,26 +111,26 @@ function createImmediateActions() {
(window as any).attachEvent('onmessage', onGlobalMessage);
}
- registerImmediate = function(handle) {
+ registerImmediate = function (handle) {
window.postMessage(messagePrefix + handle, '*');
};
}
function installMessageChannelImplementation() {
const channel = new MessageChannel();
- channel.port1.onmessage = function(event) {
+ channel.port1.onmessage = function (event) {
const handle = event.data;
runIfPresent(handle);
};
- registerImmediate = function(handle) {
+ registerImmediate = function (handle) {
channel.port2.postMessage(handle);
};
}
function installReadyStateChangeImplementation() {
const html = doc!.documentElement!;
- registerImmediate = function(handle) {
+ registerImmediate = function (handle) {
// Create a <script> element; its readystatechange event will be fired asynchronously once it is inserted
// into the document. Do so, thus queuing up the task. Remember to clean up once it's been called.
let script = doc!.createElement('script') as any;
@@ -145,7 +145,7 @@ function createImmediateActions() {
}
function installSetTimeoutImplementation() {
- registerImmediate = function(handle) {
+ registerImmediate = function (handle) {
setTimeout(runIfPresent, 0, handle);
};
}
diff --git a/src/mol-util/array.ts b/src/mol-util/array.ts
index a5f9c9b42f8fff1f46e09fe21586da72ae915a17..5ff656c6b1d5f4a22a5e0d483d81f9cfc1dd1d6c 100644
--- a/src/mol-util/array.ts
+++ b/src/mol-util/array.ts
@@ -64,7 +64,7 @@ export function arrayRms(array: ArrayLike<number>) {
}
/** Fill an array with serial numbers starting from 0 until n - 1 (defaults to array.length) */
-export function fillSerial<T extends NumberArray> (array: T, n?: number) {
+export function fillSerial<T extends NumberArray>(array: T, n?: number) {
for (let i = 0, il = n ? Math.min(n, array.length) : array.length; i < il; ++i) array[i] = i;
return array;
}
diff --git a/src/mol-util/color/names.ts b/src/mol-util/color/names.ts
index f9c5e9feb49036b7f04b60e3ecdfe5cb05c2277a..cce3a202527df7333b6ae9aefbd0e201def27ff0 100644
--- a/src/mol-util/color/names.ts
+++ b/src/mol-util/color/names.ts
@@ -166,7 +166,7 @@ export const ColorNames = ColorMap({
});
export type ColorNames = typeof ColorNames
export type ColorName = keyof ColorNames
-export const ColorNamesValueMap = (function() {
+export const ColorNamesValueMap = (function () {
const map = new Map<Color, ColorName>();
Object.keys(ColorNames).forEach(name => {
map.set(ColorNames[name as ColorName], name as ColorName);
diff --git a/src/mol-util/download.ts b/src/mol-util/download.ts
index 0d2887827f738d28e2a1edee969c86eb6022fae7..6b75cd5fb375bf0973c31c4b0d3196f5b81d2f03 100644
--- a/src/mol-util/download.ts
+++ b/src/mol-util/download.ts
@@ -4,7 +4,7 @@
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
-function openUrl (url: string) {
+function openUrl(url: string) {
const opened = window.open(url, '_blank');
if (!opened) {
window.location.href = url;
@@ -21,7 +21,7 @@ function click(node: HTMLAnchorElement) {
}
}
-export function download (data: Blob | string, downloadName = 'download') {
+export function download(data: Blob | string, downloadName = 'download') {
// using ideas from https://github.com/eligrey/FileSaver.js/blob/master/FileSaver.js
if (!data) return;
diff --git a/src/mol-util/file-info.ts b/src/mol-util/file-info.ts
index 2c8247f367df0ef7a0a74b2502ba7afbb79decbe..f5f6dea678f3a17cb6b813511e92a5f7c7f29150 100644
--- a/src/mol-util/file-info.ts
+++ b/src/mol-util/file-info.ts
@@ -27,7 +27,7 @@ export interface FileInfo {
src: FileInput
}
-export function getFileInfo (file: FileInput): FileInfo {
+export function getFileInfo(file: FileInput): FileInfo {
let path: string;
let compressed: string|false;
let protocol = '';
diff --git a/src/mol-util/graphql-client.ts b/src/mol-util/graphql-client.ts
index 0e2f5eac731cadc5044267a566b8002747a24dfa..b4b8514045f11bc2fbe11f29714b6b968bf2d529 100644
--- a/src/mol-util/graphql-client.ts
+++ b/src/mol-util/graphql-client.ts
@@ -34,7 +34,7 @@ export class ClientError extends Error {
response: GraphQLResponse
request: GraphQLRequestContext
- constructor (response: GraphQLResponse, request: GraphQLRequestContext) {
+ constructor(response: GraphQLResponse, request: GraphQLRequestContext) {
const message = `${ClientError.extractMessage(response)}: ${JSON.stringify({ response, request })}`;
super(message);
@@ -48,7 +48,7 @@ export class ClientError extends Error {
}
}
- private static extractMessage (response: GraphQLResponse): string {
+ private static extractMessage(response: GraphQLResponse): string {
return response.errors ? response.errors[0].message : `GraphQL Error (Code: ${response.status})`;
}
}
diff --git a/src/mol-util/input/event-offset.ts b/src/mol-util/input/event-offset.ts
index 8d0858eedb55be2c3c1c530a207c1937e4f4fd6d..2bfbba869b2d093b244e68170df113dc0d16656c 100644
--- a/src/mol-util/input/event-offset.ts
+++ b/src/mol-util/input/event-offset.ts
@@ -13,7 +13,7 @@ import { Vec2 } from '../../mol-math/linear-algebra';
const rootPosition = { left: 0, top: 0 };
-export function eventOffset (out: Vec2, ev: MouseEvent | Touch, target: Element) {
+export function eventOffset(out: Vec2, ev: MouseEvent | Touch, target: Element) {
const cx = ev.clientX || 0;
const cy = ev.clientY || 0;
const rect = getBoundingClientOffset(target);
@@ -22,7 +22,7 @@ export function eventOffset (out: Vec2, ev: MouseEvent | Touch, target: Element)
return out;
}
-function getBoundingClientOffset (element: Element | Window | Document) {
+function getBoundingClientOffset(element: Element | Window | Document) {
if (element instanceof Window || element instanceof Document || element === document.body) {
return rootPosition;
} else {
diff --git a/src/mol-util/polyfill.ts b/src/mol-util/polyfill.ts
index 21ab1e0c449dffa02292bc28f13d26f06d7d05f0..496918f894b5c771e89f9b351738d79dd41c0927 100644
--- a/src/mol-util/polyfill.ts
+++ b/src/mol-util/polyfill.ts
@@ -84,14 +84,14 @@ if (!Math.sign) {
if (!Number.isInteger) {
// https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Number/isInteger
- Number.isInteger = function isInteger (nVal) {
+ Number.isInteger = function isInteger(nVal) {
return typeof nVal === 'number' && isFinite(nVal) && nVal > -9007199254740992 && nVal < 9007199254740992 && Math.floor(nVal) === nVal;
};
}
if (!Number.isNaN) {
// https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Number/isNaN
- Number.isNaN = function isNaN (value) {
+ Number.isNaN = function isNaN(value) {
return value !== value; // eslint-disable-line no-self-compare
};
}
@@ -329,7 +329,7 @@ if (!Array.from) {
};
// The length property of the from method is 1.
- return function from (this: any, arrayLike: any/* , mapFn, thisArg */) {
+ return function from(this: any, arrayLike: any/* , mapFn, thisArg */) {
// 1. Let C be the this value.
const C = this;
@@ -489,7 +489,7 @@ if (Object.defineProperty !== undefined) {
}
if (!Object.entries) {
- Object.entries = function(obj: any){
+ Object.entries = function (obj: any){
const ownProps = Object.keys(obj);
let i = ownProps.length;
const resArray = new Array(i); // preallocate the Array
@@ -504,7 +504,7 @@ if (!Object.entries) {
// https://tc39.github.io/ecma262/#sec-array.prototype.find
if (!Array.prototype.find) {
Object.defineProperty(Array.prototype, 'find', {
- value: function(predicate: any) {
+ value: function (predicate: any) {
// 1. Let O be ? ToObject(this value).
if (this == null) {
throw TypeError('"this" is null or not defined');
@@ -551,7 +551,7 @@ if (!Array.prototype.find) {
// from https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Array/fill
if (!Array.prototype.fill) {
Object.defineProperty(Array.prototype, 'fill', {
- value: function(value: any) {
+ value: function (value: any) {
// Steps 1-2.
if (this == null) {
@@ -596,7 +596,7 @@ if (!Array.prototype.fill) {
if (!Array.prototype.copyWithin) {
Object.defineProperty(Array.prototype, 'copyWithin', {
- value: function(target: any, start: any/* , end*/) {
+ value: function (target: any, start: any/* , end*/) {
// Steps 1-2.
if (this == null) {
throw new TypeError('this is null or not defined');
diff --git a/src/mol-util/read.ts b/src/mol-util/read.ts
index 1b5aec57fdf1ea32eba269e5ccb08bafb428a7bd..fa38589ca95923598763ae094eddcbe41b198102 100644
--- a/src/mol-util/read.ts
+++ b/src/mol-util/read.ts
@@ -4,7 +4,7 @@
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
-export function readFile (file: File, isBinary = false) {
+export function readFile(file: File, isBinary = false) {
const fileReader = new FileReader();
return new Promise<string | Uint8Array>((resolve, reject) => {
fileReader.onerror = () => {
diff --git a/src/mol-util/reference-cache.ts b/src/mol-util/reference-cache.ts
index 6a8646e0acb2140d5ad619541a5cf7660d3d53c8..56acfc7bca5ed48b2314ea34c5462ee8509f7f0c 100644
--- a/src/mol-util/reference-cache.ts
+++ b/src/mol-util/reference-cache.ts
@@ -56,7 +56,7 @@ export function createReferenceCache<T, P>(hashFn: (props: P) => string, ctor: (
}
});
},
- get count () {
+ get count() {
return map.size;
},
dispose: () => {
diff --git a/src/mol-util/url.ts b/src/mol-util/url.ts
index c78dc107160e65f307016675b1c300450dc212e6..31d6e831fe47979dfb2332c02b010deeee6bd680 100644
--- a/src/mol-util/url.ts
+++ b/src/mol-util/url.ts
@@ -4,7 +4,7 @@
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
-export function urlQueryParameter (id: string) {
+export function urlQueryParameter(id: string) {
if (typeof window === 'undefined') return undefined;
const a = new RegExp(`${id}=([^&#=]*)`);
const m = a.exec(window.location.search);
diff --git a/src/mol-util/uuid.ts b/src/mol-util/uuid.ts
index 1a25a5e37ee963220cb63bfb05ee4c3c72573e9a..ff47e06343c0e0e1d6d40ee049f8d762453c1f41 100644
--- a/src/mol-util/uuid.ts
+++ b/src/mol-util/uuid.ts
@@ -25,7 +25,7 @@ namespace UUID {
export function createv4(): UUID {
let d = (+new Date()) + now();
- const uuid = 'xxxxxxxx-xxxx-4xxx-yxxx-xxxxxxxxxxxx'.replace(/[xy]/g, function(c) {
+ const uuid = 'xxxxxxxx-xxxx-4xxx-yxxx-xxxxxxxxxxxx'.replace(/[xy]/g, function (c) {
const r = (d + Math.random() * 16) % 16 | 0;
d = Math.floor(d / 16);
return (c === 'x' ? r : (r & 0x3 | 0x8)).toString(16);
diff --git a/src/mol-util/zip/checksum.ts b/src/mol-util/zip/checksum.ts
index 591370aeb32cfaa66a2dc196ab4cfff04e5dd14c..cd4d93fbd3105718632be7149ec1626e537d5bb5 100644
--- a/src/mol-util/zip/checksum.ts
+++ b/src/mol-util/zip/checksum.ts
@@ -7,7 +7,7 @@
* MIT License, Copyright (c) 2018 Photopea
*/
-const CrcTable = (function() {
+const CrcTable = (function () {
const tab = new Uint32Array(256);
for (let n = 0; n < 256; n++) {
let c = n;
diff --git a/src/mol-util/zip/huffman.ts b/src/mol-util/zip/huffman.ts
index dfebe8aa99607e33e8e9b747375354cc6108cc79..0ee6964e623173f81a35e004e7c43955d4cae2b0 100644
--- a/src/mol-util/zip/huffman.ts
+++ b/src/mol-util/zip/huffman.ts
@@ -32,7 +32,7 @@ export function _hufTree(hst: NumberArray, tree: number[], MAXL: number) {
tree[(l2 << 1) + 1] = 1;
return 1;
}
- list.sort(function(a, b){return a.f - b.f;});
+ list.sort(function (a, b){return a.f - b.f;});
let a = list[0], b = list[1], i0 = 0, i1 = 1, i2 = 2;
list[0] = {
lit: -1,
@@ -80,7 +80,7 @@ function setDepth(t: HufTree, d: number): number {
function restrictDepth(dps: HufTree[], MD: number, maxl: number) {
let i = 0, dbt = 0;
const bCost = 1 << (maxl - MD);
- dps.sort(function(a: HufTree, b: HufTree){return b.d === a.d ? a.f - b.f : b.d - a.d;});
+ dps.sort(function (a: HufTree, b: HufTree){return b.d === a.d ? a.f - b.f : b.d - a.d;});
for(i = 0; i < dps.length; i++) {
if(dps[i].d > MD) {
diff --git a/src/mol-util/zip/util.ts b/src/mol-util/zip/util.ts
index 45eb54ebb6ac10a1d0d7e7ef6cc9929cc92cc913..b60361d130f8a79586a750d333d72f0d90beab4c 100644
--- a/src/mol-util/zip/util.ts
+++ b/src/mol-util/zip/util.ts
@@ -7,7 +7,7 @@
* MIT License, Copyright (c) 2018 Photopea
*/
-export const U = (function(){
+export const U = (function (){
const u16 = Uint16Array, u32 = Uint32Array;
return {
next_code: new u16(16),
@@ -33,7 +33,7 @@ export const U = (function(){
};
})();
-(function(){
+(function (){
const len = 1 << 15;
for(let i = 0; i < len; i++) {
let x = i;
diff --git a/src/perf-tests/tasks.ts b/src/perf-tests/tasks.ts
index 33b6260eef1321ac8c1b9027216c06d14aebb7e6..f853dcaa548458a0910fc8655378cc5ae9509a0d 100644
--- a/src/perf-tests/tasks.ts
+++ b/src/perf-tests/tasks.ts
@@ -158,7 +158,7 @@ export namespace Tasks {
}
}
-(async function() {
+(async function () {
// await Tasks.testImmediate();
// await Tasks.testImmediate();
diff --git a/src/servers/model/server/api.ts b/src/servers/model/server/api.ts
index 153a2753032520547661055ad6f617fcd1ac276e..70d864251a91f0cce71ba91094c0b67f4b333780 100644
--- a/src/servers/model/server/api.ts
+++ b/src/servers/model/server/api.ts
@@ -107,7 +107,7 @@ const AtomSiteTestJsonParam: QueryParamInfo = {
exampleValues: [[{ label_seq_id: 30, label_asym_id: 'A' }, { label_seq_id: 31, label_asym_id: 'A' }], { label_comp_id: 'ALA' }]
};
-export const AtomSiteTestRestParams = (function() {
+export const AtomSiteTestRestParams = (function () {
const params: QueryParamInfo[] = [];
for (const k of Object.keys(AtomSiteSchemaElement)) {
const p = (AtomSiteSchemaElement as any)[k] as QueryParamInfo;