From 2b72098f958f5adf6f3d47bbab6093140e6e4c12 Mon Sep 17 00:00:00 2001
From: Alexander Rose <alexander.rose@weirdbyte.de>
Date: Sat, 11 Dec 2021 11:42:15 -0800
Subject: [PATCH] fix: false positives in Model.isFromPdbArchive
- wrong for, e.g., AlphaFold DB entries
---
src/mol-model/structure/model/model.ts | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/src/mol-model/structure/model/model.ts b/src/mol-model/structure/model/model.ts
index 1ad97480e..082884c44 100644
--- a/src/mol-model/structure/model/model.ts
+++ b/src/mol-model/structure/model/model.ts
@@ -283,8 +283,10 @@ export namespace Model {
export function isFromPdbArchive(model: Model): boolean {
if (!MmcifFormat.is(model.sourceData)) return false;
const { db } = model.sourceData.data;
+ for (let i = 0, il = db.database_2.database_id.rowCount; i < il; ++i) {
+ if (db.database_2.database_id.value(i) === 'PDB') return true;
+ }
return (
- db.database_2.database_id.isDefined ||
// 4 character PDB id
model.entryId.match(/^[1-9][a-z0-9]{3,3}$/i) !== null ||
// long PDB id
--
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