diff --git a/src/apps/basic-wrapper/helpers.ts b/src/apps/basic-wrapper/helpers.ts
index fea278e4fedd2603508bd4ce955a54bb1d57ab64..b0b364e73b432527d018844dc5befd194a64e252 100644
--- a/src/apps/basic-wrapper/helpers.ts
+++ b/src/apps/basic-wrapper/helpers.ts
@@ -63,7 +63,7 @@ export namespace StateHelper {
}
export function transform(b: StateBuilder.To<PSO.Molecule.Structure>, matrix: Mat4) {
- return b.apply(StateTransforms.Model.TransformStructureConformation, {
+ return b.apply(StateTransforms.Model.TransformStructureConformation, {
transform: { name: 'matrix', params: matrix }
}, { tags: 'transform' });
}
diff --git a/src/apps/chem-comp-bond/create-table.ts b/src/apps/chem-comp-bond/create-table.ts
index 1e26c4935c4e44adf886ccfaee13c736e08ff9f4..6fbb74820ae5364bdb8eef651de9193c70d6a849 100644
--- a/src/apps/chem-comp-bond/create-table.ts
+++ b/src/apps/chem-comp-bond/create-table.ts
@@ -144,7 +144,7 @@ async function createBonds() {
const comp_id: string[] = []
const atom_id_1: string[] = []
const atom_id_2: string[] = []
- const value_order: typeof mmCIF_chemCompBond_schema['value_order']['T'][] = []
+ const value_order: typeof mmCIF_chemCompBond_schema['value_order']['T'][] = []
const pdbx_aromatic_flag: typeof mmCIF_chemCompBond_schema['pdbx_aromatic_flag']['T'][] = []
const pdbx_stereo_config: typeof mmCIF_chemCompBond_schema['pdbx_stereo_config']['T'][] = []
const molstar_protonation_variant: string[] = []
diff --git a/src/mol-model/structure/structure/unit/bonds.ts b/src/mol-model/structure/structure/unit/bonds.ts
index 2cc0c7b298e04d449f22f65a800c6441a6dcd520..ebda56117bb93d604118b5de9ab464ee86b64904 100644
--- a/src/mol-model/structure/structure/unit/bonds.ts
+++ b/src/mol-model/structure/structure/unit/bonds.ts
@@ -19,7 +19,7 @@ export * from './bonds/inter-compute'
namespace Bond {
export interface Location<U extends Unit = Unit> {
readonly kind: 'bond-location',
-
+
aStructure: Structure,
aUnit: U,
/** Index into aUnit.elements */
diff --git a/src/mol-model/structure/structure/unit/rings.ts b/src/mol-model/structure/structure/unit/rings.ts
index 84eb3ac0c6c29698733e2222837acd5324fd17f0..c7776ba611efcff5088f397ab28296a406fa643c 100644
--- a/src/mol-model/structure/structure/unit/rings.ts
+++ b/src/mol-model/structure/structure/unit/rings.ts
@@ -157,11 +157,11 @@ namespace UnitRings {
/** Creates a mapping ResidueIndex -> list or rings that are on that residue and have one of the specified fingerprints. */
export function byFingerprintAndResidue(rings: UnitRings, fingerprints: ReadonlyArray<UnitRing.Fingerprint>) {
const map = new Map<ResidueIndex, Index[]>();
-
+
for (let fI = 0, _fI = fingerprints.length; fI < _fI; fI++) {
const fp = fingerprints[fI];
addSingleResidueRings(rings, fp, map);
- }
+ }
return map;
}
}
diff --git a/src/mol-model/structure/structure/unit/rings/compute.ts b/src/mol-model/structure/structure/unit/rings/compute.ts
index 4f93aec8b0f771d719ce2bcd353901062b727fc7..3c84b1d73ced506b404b13225c73a58f1c7e77f2 100644
--- a/src/mol-model/structure/structure/unit/rings/compute.ts
+++ b/src/mol-model/structure/structure/unit/rings/compute.ts
@@ -116,7 +116,7 @@ function processResidue(state: State, start: number, end: number) {
arraySetAdd(altLocs, altLoc);
}
arraySetRemove(altLocs, '');
-
+
if (altLocs.length === 0) {
resetState(state);
for (let i = 0; i < state.count; i++) {
diff --git a/src/mol-model/structure/structure/util/unit-transforms.ts b/src/mol-model/structure/structure/util/unit-transforms.ts
index f2de9309b2d0d65654b581b2d3e772dcc1d4c609..0fb9d319df145525766cb29df4675cc2a2725112 100644
--- a/src/mol-model/structure/structure/util/unit-transforms.ts
+++ b/src/mol-model/structure/structure/util/unit-transforms.ts
@@ -18,9 +18,9 @@ export class StructureUnitTransforms {
private unitOffsetMap = IntMap.Mutable<number>();
private groupIndexMap = IntMap.Mutable<number>();
private size: number;
-
+
private _isIdentity: boolean | undefined = undefined;
-
+
version = 0;
constructor(readonly structure: Structure) {
diff --git a/src/mol-plugin-state/actions/data-format.ts b/src/mol-plugin-state/actions/data-format.ts
index feaf4da09fa5ca6bf2f4a903a1747afc3c14418a..eb1a3ce223d4c2063c6722896955064dfb0c5676 100644
--- a/src/mol-plugin-state/actions/data-format.ts
+++ b/src/mol-plugin-state/actions/data-format.ts
@@ -137,12 +137,12 @@ export const OpenFiles = StateAction.build({
const info = getFileInfo(file)
const isBinary = plugin.dataFormat.registry.binaryExtensions.has(info.ext)
const { data } = await plugin.builders.data.readFile({ file, isBinary });
- //const data = state.build().toRoot().apply(StateTransforms.Data.ReadFile, { file, isBinary });
+ // const data = state.build().toRoot().apply(StateTransforms.Data.ReadFile, { file, isBinary });
// const dataStateObject = await state.updateTree(data).runInContext(taskCtx);
const provider = params.format === 'auto'
? plugin.dataFormat.registry.auto(info, data.cell?.obj!)
: plugin.dataFormat.registry.get(params.format)
-
+
// need to await so that the enclosing Task finishes after the update is done.
await provider.getDefaultBuilder(plugin, data, { visuals: params.visuals }, state).runInContext(taskCtx)
} catch (e) {
diff --git a/src/mol-plugin-state/helpers/structure-overpaint.ts b/src/mol-plugin-state/helpers/structure-overpaint.ts
index 9eda24d32178f54f37bed0dcea770a9921bbe238..cc977e3972750639d86c9099c2cfdeebaaa7e355 100644
--- a/src/mol-plugin-state/helpers/structure-overpaint.ts
+++ b/src/mol-plugin-state/helpers/structure-overpaint.ts
@@ -56,7 +56,7 @@ export async function clearStructureOverpaint(plugin: PluginContext, components:
}
async function eachRepr(plugin: PluginContext, components: StructureComponentRef[], callback: OverpaintEachReprCallback) {
- const state = plugin.state.data;
+ const state = plugin.state.data;
const update = state.build();
for (const c of components) {
for (const r of c.representations) {
diff --git a/src/mol-repr/structure/registry.ts b/src/mol-repr/structure/registry.ts
index 13db289edad5e072a104e993de5c5168db31a9f4..e64bc74ae07c781f48ba33a6f6a8659a0cf250d1 100644
--- a/src/mol-repr/structure/registry.ts
+++ b/src/mol-repr/structure/registry.ts
@@ -45,7 +45,7 @@ export namespace StructureRepresentationRegistry {
'putty': PuttyRepresentationProvider,
'spacefill': SpacefillRepresentationProvider,
}
-
+
type _BuiltIn = typeof BuiltIn
export type BuiltIn = keyof _BuiltIn
export type BuiltInParams<T extends BuiltIn> = Partial<RepresentationProvider.ParamValues<_BuiltIn[T]>>
diff --git a/src/mol-repr/volume/registry.ts b/src/mol-repr/volume/registry.ts
index 05ed2a8790d034b0a86544a741d83ddc863b0fbe..758371e1eaedf23318d7d2921a601abcd67bda43 100644
--- a/src/mol-repr/volume/registry.ts
+++ b/src/mol-repr/volume/registry.ts
@@ -11,7 +11,7 @@ import { objectForEach } from '../../mol-util/object';
export class VolumeRepresentationRegistry extends RepresentationRegistry<VolumeData, Representation.State> {
constructor() {
- super()
+ super()
objectForEach(VolumeRepresentationRegistry.BuiltIn, (p, k) => {
if (p.name !== k) throw new Error(`Fix BuiltInVolumeRepresentations to have matching names. ${p.name} ${k}`);
this.add(p as any)
diff --git a/src/mol-state/action/manager.ts b/src/mol-state/action/manager.ts
index 365975f7c94198905bbfd37f4764a8ff3b89c78f..a285a1a7ef6963acb23f59681396f9f8913f4550 100644
--- a/src/mol-state/action/manager.ts
+++ b/src/mol-state/action/manager.ts
@@ -35,11 +35,11 @@ class StateActionManager {
}
remove(actionOrTransformer: StateAction | StateTransformer | UUID) {
- const id = StateTransformer.is(actionOrTransformer)
- ? actionOrTransformer.toAction().id
+ const id = StateTransformer.is(actionOrTransformer)
+ ? actionOrTransformer.toAction().id
: UUID.is(actionOrTransformer)
- ? actionOrTransformer
- : actionOrTransformer.id;
+ ? actionOrTransformer
+ : actionOrTransformer.id;
const action = this.actions.get(id);
if (!action) return this;
diff --git a/src/mol-theme/size/shape-group.ts b/src/mol-theme/size/shape-group.ts
index 811b1cb9598d39e8c7889142cb8123ca89319405..9537c7bc5e95ea1010e5b9c256dff8bfed3fb53d 100644
--- a/src/mol-theme/size/shape-group.ts
+++ b/src/mol-theme/size/shape-group.ts
@@ -37,7 +37,7 @@ export function ShapeGroupSizeTheme(ctx: ThemeDataContext, props: PD.Values<Shap
export const ShapeGroupSizeThemeProvider: SizeTheme.Provider<ShapeGroupSizeThemeParams, 'shape-group'> = {
name: 'shape-group',
label: 'Shape Group',
- category: '',
+ category: '',
factory: ShapeGroupSizeTheme,
getParams: getShapeGroupSizeThemeParams,
defaultValues: PD.getDefaultValues(ShapeGroupSizeThemeParams),
diff --git a/src/servers/plugin-state/config.ts b/src/servers/plugin-state/config.ts
index a7336f784a87a3b300e186c4d837f4b40f538136..8cd474926259ddb5462d03e68cb04bd840c29b78 100644
--- a/src/servers/plugin-state/config.ts
+++ b/src/servers/plugin-state/config.ts
@@ -21,8 +21,8 @@ export function getConfig() {
cmdParser.addArgument(['--port'], { help: 'Server port. Altenatively use ENV variable PORT.', type: 'int', required: false });
cmdParser.addArgument(['--api-prefix'], { help: 'Server API prefix.', defaultValue: '', required: false });
cmdParser.addArgument(['--max-states'], { help: 'Maxinum number of states that could be saved.', defaultValue: 40, type: 'int', required: false });
-
- const config = cmdParser.parseArgs() as Config;
+
+ const config = cmdParser.parseArgs() as Config;
if (!config.port) config.port = process.env.port || 1339;
return config;
}
diff --git a/src/servers/plugin-state/index.ts b/src/servers/plugin-state/index.ts
index ba0e2d251e42a0a803b3878320e98146cb27349d..f8cd83631679504d0e2b8a55626665d53099858d 100644
--- a/src/servers/plugin-state/index.ts
+++ b/src/servers/plugin-state/index.ts
@@ -47,8 +47,8 @@ function readIndex() {
function validateIndex(index: Index) {
if (index.length > Config.max_states) {
const deletes: Index = [], newIndex: Index = [];
- const toDelete = index.length - Config.max_states;
-
+ const toDelete = index.length - Config.max_states;
+
for (const e of index) {
if (!e.isSticky && deletes.length < toDelete) {
deletes.push(e);
@@ -71,7 +71,7 @@ function remove(id: string) {
let index = readIndex();
let i = 0;
for (const e of index) {
- if (e.id !== id) {
+ if (e.id !== id) {
i++;
continue;
}
diff --git a/src/servers/volume/config.ts b/src/servers/volume/config.ts
index 4647394333be0bc905ac5a1fbfab83a1194b213f..28648370157b5f8f5e0bf12aeebca03f0e8c7f4e 100644
--- a/src/servers/volume/config.ts
+++ b/src/servers/volume/config.ts
@@ -84,12 +84,12 @@ function addServerArgs(parser: argparse.ArgumentParser) {
}
function addJsonConfigArgs(parser: argparse.ArgumentParser) {
- parser.addArgument(['--cfg'], {
+ parser.addArgument(['--cfg'], {
help: [
'JSON config file path',
'If a property is not specified, cmd line param/OS variable/default value are used.'
].join('\n'),
- required: false
+ required: false
});
parser.addArgument(['--printCfg'], { help: 'Print current config for validation and exit.', required: false, nargs: 0 });
parser.addArgument(['--cfgTemplate'], { help: 'Prints default JSON config template to be modified and exits.', required: false, nargs: 0 });
@@ -169,25 +169,25 @@ export function configureServer() {
console.log(JSON.stringify(ServerConfigTemplate, null, 2));
process.exit(0);
}
-
+
try {
setConfig(config) // sets the config for global use
-
+
if (config.cfg) {
const cfg = JSON.parse(fs.readFileSync(config.cfg, 'utf8')) as FullServerConfig;
setConfig(cfg);
}
-
+
if (config.printCfg !== null) {
console.log(JSON.stringify({ ...ServerConfig, ...LimitsConfig }, null, 2));
process.exit(0);
}
-
+
validateServerConfig();
} catch (e) {
console.error('' + e);
process.exit(1);
- }
+ }
}
export function configureLocal() {
@@ -207,23 +207,23 @@ export function configureLocal() {
console.log(JSON.stringify(DefaultLimitsConfig, null, 2));
process.exit(0);
}
-
+
try {
setLimitsConfig(config) // sets the config for global use
-
+
if (config.cfg) {
const cfg = JSON.parse(fs.readFileSync(config.cfg, 'utf8')) as FullServerConfig;
setLimitsConfig(cfg);
}
-
+
if (config.printCfg !== null) {
console.log(JSON.stringify(LimitsConfig, null, 2));
process.exit(0);
}
-
+
return config as LimitsConfig & { jobs: string, jobsTemplate: any };
} catch (e) {
console.error('' + e);
process.exit(1);
- }
+ }
}
\ No newline at end of file