From 5ed17ce4e515ae99508aab64b867d0c5fcbe6450 Mon Sep 17 00:00:00 2001
From: David Sehnal <david.sehnal@gmail.com>
Date: Fri, 21 Jun 2019 12:47:14 +0200
Subject: [PATCH] proteopedia-wrapper: evolutionary coloring on current
representation
---
src/examples/proteopedia-wrapper/index.html | 3 ++-
src/examples/proteopedia-wrapper/index.ts | 18 +++++++++++++-----
2 files changed, 15 insertions(+), 6 deletions(-)
diff --git a/src/examples/proteopedia-wrapper/index.html b/src/examples/proteopedia-wrapper/index.html
index 5fd7d7bbc..632496100 100644
--- a/src/examples/proteopedia-wrapper/index.html
+++ b/src/examples/proteopedia-wrapper/index.html
@@ -149,7 +149,8 @@
addSeparator();
addHeader('Misc');
- addControl('Apply Evo Cons', () => PluginWrapper.coloring.evolutionaryConservation());
+ addControl('Apply Evo Cons Style', () => PluginWrapper.coloring.evolutionaryConservation());
+ addControl('Apply Evo Cons Colors', () => PluginWrapper.coloring.evolutionaryConservation({ sequence: true, het: false, keepStyle: true }));
addControl('Default Visuals', () => PluginWrapper.updateStyle());
addSeparator();
diff --git a/src/examples/proteopedia-wrapper/index.ts b/src/examples/proteopedia-wrapper/index.ts
index 956ae98c1..750503e5e 100644
--- a/src/examples/proteopedia-wrapper/index.ts
+++ b/src/examples/proteopedia-wrapper/index.ts
@@ -253,18 +253,26 @@ class MolStarProteopediaWrapper {
}
coloring = {
- evolutionaryConservation: async () => {
- await this.updateStyle({ sequence: { kind: 'spacefill' } }, true);
+ evolutionaryConservation: async (params?: { sequence?: boolean, het?: boolean, keepStyle?: boolean }) => {
+ if (!params || !params.keepStyle) {
+ await this.updateStyle({ sequence: { kind: 'spacefill' } }, true);
+ }
const state = this.state;
// const visuals = state.selectQ(q => q.ofType(PluginStateObject.Molecule.Structure.Representation3D).filter(c => c.transform.transformer === StateTransforms.Representation.StructureRepresentation3D));
+ // for (const v of visuals) {
+ // }
+
const tree = state.build();
const colorTheme = { name: EvolutionaryConservation.Descriptor.name, params: this.plugin.structureRepresentation.themeCtx.colorThemeRegistry.get(EvolutionaryConservation.Descriptor.name).defaultValues };
- tree.to(StateElements.SequenceVisual).update(StateTransforms.Representation.StructureRepresentation3D, old => ({ ...old, colorTheme }));
- // for (const v of visuals) {
- // }
+ if (!params || !!params.sequence) {
+ tree.to(StateElements.SequenceVisual).update(StateTransforms.Representation.StructureRepresentation3D, old => ({ ...old, colorTheme }));
+ }
+ if (params && !!params.het) {
+ tree.to(StateElements.HetVisual).update(StateTransforms.Representation.StructureRepresentation3D, old => ({ ...old, colorTheme }));
+ }
await PluginCommands.State.Update.dispatch(this.plugin, { state, tree });
}
--
GitLab