From 72bdd5bc05a047e32dab66e47abedd50cb105ea1 Mon Sep 17 00:00:00 2001
From: JonStargaryen <sebastian.bittrich@rcsb.org>
Date: Fri, 5 Jun 2020 11:20:16 -0700
Subject: [PATCH] asaCutoff param
---
src/mol-model-props/computed/membrane-orientation/ANVIL.ts | 4 ++--
.../computed/membrane-orientation/anvil/common.ts | 2 +-
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/mol-model-props/computed/membrane-orientation/ANVIL.ts b/src/mol-model-props/computed/membrane-orientation/ANVIL.ts
index 2050887f2..51a3dd478 100644
--- a/src/mol-model-props/computed/membrane-orientation/ANVIL.ts
+++ b/src/mol-model-props/computed/membrane-orientation/ANVIL.ts
@@ -22,7 +22,7 @@ export const ANVILParams = {
stepSize: PD.Numeric(1, { min: 0.25, max: 4, step: 0.25 }, { description: 'Thickness of membrane slices that will be tested' }),
minThickness: PD.Numeric(20, { min: 10, max: 30, step: 1}, { description: 'Minimum membrane thickness used during refinement' }),
maxThickness: PD.Numeric(40, { min: 30, max: 50, step: 1}, { description: 'Maximum membrane thickness used during refinement' }),
- afilter: PD.Numeric(40, { min: 10, max: 100, step: 1 }, { description: 'Absolute ASA cutoff above which residues will be considered' })
+ asaCutoff: PD.Numeric(40, { min: 10, max: 100, step: 1 }, { description: 'Absolute ASA cutoff above which residues will be considered' })
};
export type ANVILParams = typeof ANVILParams
export type ANVILProps = PD.Values<ANVILParams>
@@ -81,7 +81,7 @@ function initialize(structure: Structure, props: ANVILProps): ANVILContext {
// keep track of offsets and exposed state to reuse
offsets[m] = l.element;
- exposed[m] = AccessibleSurfaceArea.getValue(l, asa) > props.afilter;
+ exposed[m] = AccessibleSurfaceArea.getValue(l, asa) > props.asaCutoff;
m++;
}
diff --git a/src/mol-model-props/computed/membrane-orientation/anvil/common.ts b/src/mol-model-props/computed/membrane-orientation/anvil/common.ts
index 6803ff00c..fa0970a05 100644
--- a/src/mol-model-props/computed/membrane-orientation/anvil/common.ts
+++ b/src/mol-model-props/computed/membrane-orientation/anvil/common.ts
@@ -14,7 +14,7 @@ export interface ANVILContext {
stepSize: number,
minThickness: number,
maxThickness: number,
- afilter: number,
+ asaCutoff: number,
offsets: ArrayLike<number>,
exposed: ArrayLike<boolean>,
--
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