From 7edac1794e636c86773ab9d09fb914e162f10647 Mon Sep 17 00:00:00 2001
From: Alexander Rose <alex.rose@rcsb.org>
Date: Thu, 2 May 2019 15:58:35 -0700
Subject: [PATCH] fixed wrong index use when atom_site in ihm models
---
src/mol-model-formats/structure/mmcif/parser.ts | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/src/mol-model-formats/structure/mmcif/parser.ts b/src/mol-model-formats/structure/mmcif/parser.ts
index b7e9d1ef0..4c4067686 100644
--- a/src/mol-model-formats/structure/mmcif/parser.ts
+++ b/src/mol-model-formats/structure/mmcif/parser.ts
@@ -347,7 +347,8 @@ async function readIHM(ctx: RuntimeContext, format: mmCIF_Format, formatData: Fo
let atom_site, atom_site_sourceIndex;
if (atom_sites.has(id)) {
const e = atom_sites.get(id)!;
- const { atom_site: sorted, sourceIndex } = await sortAtomSite(ctx, e.table, e.start, e.end);
+ // need to sort `format.data.atom_site` as `e.start` and `e.end` are indices into that
+ const { atom_site: sorted, sourceIndex } = await sortAtomSite(ctx, format.data.atom_site, e.start, e.end);
atom_site = sorted;
atom_site_sourceIndex = sourceIndex;
} else {
--
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