From 8bd407a7ffc4c44be343953887899887ce3b84c1 Mon Sep 17 00:00:00 2001
From: Alexander Rose <alexander.rose@weirdbyte.de>
Date: Tue, 5 Jun 2018 17:28:20 +0200
Subject: [PATCH] sequence todos
---
src/mol-model/structure/model/properties/sequence.ts | 7 +++++++
1 file changed, 7 insertions(+)
diff --git a/src/mol-model/structure/model/properties/sequence.ts b/src/mol-model/structure/model/properties/sequence.ts
index 229c5509b..fa3512028 100644
--- a/src/mol-model/structure/model/properties/sequence.ts
+++ b/src/mol-model/structure/model/properties/sequence.ts
@@ -12,6 +12,10 @@ interface Sequence {
readonly byEntityKey: { [key: number]: Sequence.Entity }
}
+// TODO lift to model/sequence/ folder
+// TODO add one letter code sequence string
+// TODO add mapping support to other sequence spaces, e.g. uniprot
+
namespace Sequence {
export interface Entity {
readonly entityId: string,
@@ -27,6 +31,9 @@ namespace Sequence {
const byEntityKey: Sequence['byEntityKey'] = {};
+ // TODO get min/max of label_seq_id to handle missing residues at start and in between
+ // note that this assumes label_seq_id is monotonically increasing
+
const chainCount = hierarchy.chains._rowCount
for (let i = 0; i < chainCount; ++i) {
const entityId = label_entity_id.value(i)
--
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