From 9074d5390afb1bb57fe59ec2744ebd2bb3076e7e Mon Sep 17 00:00:00 2001
From: Alexander Rose <alex.rose@rcsb.org>
Date: Thu, 24 Oct 2019 16:28:06 -0700
Subject: [PATCH] add support for sequence numbers in coarse units
---
src/mol-plugin/ui/sequence/sequence.tsx | 12 ++++++++----
1 file changed, 8 insertions(+), 4 deletions(-)
diff --git a/src/mol-plugin/ui/sequence/sequence.tsx b/src/mol-plugin/ui/sequence/sequence.tsx
index 9619a5cde..065337366 100644
--- a/src/mol-plugin/ui/sequence/sequence.tsx
+++ b/src/mol-plugin/ui/sequence/sequence.tsx
@@ -11,7 +11,7 @@ import { Interactivity } from '../../util/interactivity';
import { MarkerAction } from '../../../mol-util/marker-action';
import { ButtonsType, ModifiersKeys, getButtons, getModifiers } from '../../../mol-util/input/input-observer';
import { SequenceWrapper } from './wrapper';
-import { StructureElement, StructureProperties } from '../../../mol-model/structure';
+import { StructureElement, StructureProperties, Unit } from '../../../mol-model/structure';
import { Subject } from 'rxjs';
import { debounceTime } from 'rxjs/operators';
import { Color } from '../../../mol-util/color';
@@ -131,9 +131,13 @@ export class Sequence<P extends SequenceProps> extends PluginUIComponent<P> {
const loci = this.props.sequenceWrapper.getLoci(seqIdx)
const l = StructureElement.Loci.getFirstLocation(loci, this.location);
if (l) {
- const seqId = StructureProperties.residue.auth_seq_id(l)
- const insCode = StructureProperties.residue.pdbx_PDB_ins_code(l)
- sequenceNumber = `${seqId}${insCode ? insCode : ''}`
+ if (Unit.isAtomic(l.unit)) {
+ const seqId = StructureProperties.residue.auth_seq_id(l)
+ const insCode = StructureProperties.residue.pdbx_PDB_ins_code(l)
+ sequenceNumber = `${seqId}${insCode ? insCode : ''}`
+ } else if (Unit.isCoarse(l.unit)) {
+ sequenceNumber = `${seqIdx + 1}`
+ }
}
return <span key={`marker-${seqIdx}`} className={this.getSequenceNumberClass(seqIdx, label)}>{this.padSeqNum(sequenceNumber)}</span>
}
--
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