From 9699a23a128b1e93f69f4a2c4f14ff69b1ae9a9d Mon Sep 17 00:00:00 2001
From: David Sehnal <david.sehnal@gmail.com>
Date: Sat, 7 Apr 2018 01:54:31 +0200
Subject: [PATCH] started annotations
---
src/mol-model/annotation/annotation.ts | 40 ++++++++++++++++++++++++++
src/mol-model/annotations.ts | 17 +++++++++++
src/mol-model/structure/model/model.ts | 2 ++
3 files changed, 59 insertions(+)
create mode 100644 src/mol-model/annotation/annotation.ts
create mode 100644 src/mol-model/annotations.ts
diff --git a/src/mol-model/annotation/annotation.ts b/src/mol-model/annotation/annotation.ts
new file mode 100644
index 000000000..338c2de1c
--- /dev/null
+++ b/src/mol-model/annotation/annotation.ts
@@ -0,0 +1,40 @@
+/**
+ * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ *
+ * @author David Sehnal <david.sehnal@gmail.com>
+ */
+
+import { Structure, ElementSet, Element } from '../structure'
+
+interface Annotation<E = any> {
+ definition: Annotation.Definition<E>,
+ getValue(l: Element.Location): E | undefined,
+ getAll(l: ElementSet): { annotations: E[], /* TODO: map annotations to elements */ }
+}
+
+namespace Annotation {
+ export const enum Kind {
+ Atom,
+ Residue,
+ Sequence,
+ Chain,
+ Entity,
+ Coarse,
+ Spatial
+ }
+
+ export const enum Type {
+ Num,
+ Str,
+ Obj
+ }
+
+ export interface Definition<E = any> {
+ name: string,
+ kind: Kind,
+ type: Type,
+ prepare<Data>(s: Structure, data: Data): Annotation<E>,
+ }
+}
+
+export { Annotation }
\ No newline at end of file
diff --git a/src/mol-model/annotations.ts b/src/mol-model/annotations.ts
new file mode 100644
index 000000000..828e23293
--- /dev/null
+++ b/src/mol-model/annotations.ts
@@ -0,0 +1,17 @@
+/**
+ * Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ *
+ * @author David Sehnal <david.sehnal@gmail.com>
+ */
+
+import { Annotation } from './annotation/annotation'
+import { UUID } from 'mol-util'
+
+interface Annotations {
+ id: UUID,
+ all: Annotation[],
+ byKind: { [kind: number]: Annotation }
+ //getAll()
+}
+
+export { Annotations }
\ No newline at end of file
diff --git a/src/mol-model/structure/model/model.ts b/src/mol-model/structure/model/model.ts
index e6ed614f4..3a748e1af 100644
--- a/src/mol-model/structure/model/model.ts
+++ b/src/mol-model/structure/model/model.ts
@@ -18,6 +18,7 @@ import computeBonds from './utils/compute-bonds'
import from_gro from './formats/gro'
import from_mmCIF from './formats/mmcif'
+import { Annotations } from '../../annotations'
/**
* Interface to the "source data" of the molecule.
@@ -35,6 +36,7 @@ interface Model extends Readonly<{
conformation: Conformation,
symmetry: Symmetry,
coarseGrained: CoarseGrained,
+ annotations: Annotations,
atomCount: number,
}> {
--
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