From a5405a509fd22eb08dbef84c8fbcb711c6c8fa8c Mon Sep 17 00:00:00 2001
From: David Sehnal <david.sehnal@gmail.com>
Date: Fri, 3 Nov 2017 12:13:10 +0100
Subject: [PATCH] Renamed to mol*
---
LICENSE | 2 +-
package.json | 4 +--
.../collections/_spec/equiv-index.spec.ts | 2 +-
.../collections/_spec/iterators.spec.ts | 2 +-
src/mol-base/collections/_spec/sort.spec.ts | 2 +-
src/mol-base/collections/chunked-array.ts | 2 +-
src/mol-base/collections/database.ts | 2 +-
.../collections/database/_spec/table.spec.ts | 2 +-
.../collections/database/column-helpers.ts | 2 +-
src/mol-base/collections/database/column.ts | 2 +-
src/mol-base/collections/database/database.ts | 2 +-
src/mol-base/collections/database/table.ts | 2 +-
.../collections/equivalence-classes.ts | 2 +-
src/mol-base/collections/hash-functions.ts | 2 +-
src/mol-base/collections/hash-set.ts | 2 +-
src/mol-base/collections/integer.ts | 2 +-
.../integer/_spec/interval.spec.ts | 2 +-
.../integer/_spec/linked-index.spec.ts | 2 +-
.../integer/_spec/ordered-set.spec.ts | 2 +-
.../integer/_spec/segmentation.spec.ts | 2 +-
.../integer/_spec/sorted-array.spec.ts | 2 +-
.../collections/integer/_spec/tuple.spec.ts | 2 +-
.../collections/integer/impl/interval.ts | 2 +-
.../collections/integer/impl/ordered-set.ts | 2 +-
.../collections/integer/impl/segmentation.ts | 2 +-
.../collections/integer/impl/sorted-array.ts | 2 +-
src/mol-base/collections/integer/interval.ts | 2 +-
.../collections/integer/linked-index.ts | 2 +-
.../collections/integer/ordered-set.ts | 2 +-
.../collections/integer/segmentation.ts | 2 +-
.../collections/integer/sorted-array.ts | 2 +-
src/mol-base/collections/integer/tuple.ts | 2 +-
src/mol-base/collections/iterator.ts | 2 +-
src/mol-base/collections/sort.ts | 2 +-
src/mol-base/computation.ts | 2 +-
src/mol-base/geometry/grid-lookup.ts | 2 ++
src/mol-base/geometry/sphere.ts | 1 +
src/mol-base/geometry/transform.ts | 27 +++++++++++++++++++
...linear-algebra.ts => linear-algebra-3d.ts} | 2 +-
src/mol-base/utils/bit-flags.ts | 2 +-
src/mol-base/utils/scheduler.ts | 2 +-
src/mol-base/utils/time.ts | 2 +-
src/mol-base/utils/uuid.ts | 2 +-
src/mol-data/structure.ts | 2 +-
src/mol-data/structure/_spec/atom-set.spec.ts | 2 +-
src/mol-data/structure/model.ts | 2 +-
src/mol-data/structure/model/constants.ts | 2 +-
src/mol-data/structure/model/format.ts | 2 +-
src/mol-data/structure/model/formats/mmcif.ts | 2 +-
src/mol-data/structure/model/model.ts | 2 +-
.../structure/model/properties/computed.ts | 2 +-
.../model/properties/conformation.ts | 2 +-
.../model/properties/format-specific.ts | 2 +-
.../structure/model/properties/hierarchy.ts | 2 +-
.../structure/model/properties/transforms.ts | 2 +-
.../structure/model/utils/hierarchy-keys.ts | 2 +-
src/mol-data/structure/query.ts | 2 +-
src/mol-data/structure/query/generators.ts | 2 +-
src/mol-data/structure/query/properties.ts | 2 +-
src/mol-data/structure/query/query.ts | 2 +-
src/mol-data/structure/query/selection.ts | 2 +-
src/mol-data/structure/structure.ts | 2 +-
src/mol-data/structure/structure/atom.ts | 2 +-
src/mol-data/structure/structure/atom/set.ts | 2 +-
.../structure/structure/atom/set/builder.ts | 2 +-
.../structure/structure/atom/set/impl.ts | 2 +-
.../structure/atom/set/properties.ts | 2 +-
src/mol-data/structure/structure/operator.ts | 4 +--
src/mol-data/structure/structure/structure.ts | 2 +-
src/mol-data/structure/structure/unit.ts | 2 +-
src/mol-io/reader/_spec/cif.spec.ts | 2 +-
src/mol-io/reader/_spec/column.spec.ts | 2 +-
src/mol-io/reader/_spec/gro.spec.ts | 2 +-
src/mol-io/reader/cif.ts | 2 +-
src/mol-io/reader/cif/binary/decoder.ts | 2 +-
src/mol-io/reader/cif/binary/encoding.ts | 2 +-
src/mol-io/reader/cif/binary/field.ts | 2 +-
src/mol-io/reader/cif/binary/parser.ts | 2 +-
src/mol-io/reader/cif/data-model.ts | 2 +-
src/mol-io/reader/cif/schema.ts | 2 +-
src/mol-io/reader/cif/schema/dic.ts | 2 +-
src/mol-io/reader/cif/schema/mmcif.ts | 2 +-
src/mol-io/reader/cif/schema/utils.ts | 2 +-
src/mol-io/reader/cif/text/field.ts | 2 +-
src/mol-io/reader/cif/text/parser.ts | 2 +-
src/mol-io/reader/common/binary/column.ts | 2 +-
src/mol-io/reader/common/text/column/fixed.ts | 2 +-
src/mol-io/reader/common/text/column/token.ts | 2 +-
.../reader/common/text/number-parser.ts | 2 +-
src/mol-io/reader/common/text/tokenizer.ts | 2 +-
src/mol-io/reader/gro/parser.ts | 2 +-
src/mol-io/reader/gro/schema.d.ts | 2 +-
src/mol-io/reader/mol2/schema.d.ts | 2 +-
src/mol-io/reader/result.ts | 2 +-
src/mol-io/utils/msgpack/decode.ts | 2 +-
src/mol-io/utils/msgpack/encode.ts | 2 +-
src/mol-io/utils/short-string-pool.ts | 2 +-
src/mol-io/utils/utf8.ts | 2 +-
src/perf-tests/structure.ts | 2 +-
src/script.ts | 2 +-
100 files changed, 129 insertions(+), 99 deletions(-)
create mode 100644 src/mol-base/geometry/grid-lookup.ts
create mode 100644 src/mol-base/geometry/sphere.ts
create mode 100644 src/mol-base/geometry/transform.ts
rename src/mol-base/math/{linear-algebra.ts => linear-algebra-3d.ts} (99%)
diff --git a/LICENSE b/LICENSE
index b05c3f1cd..c4c761c07 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,6 +1,6 @@
The MIT License
- Copyright (c) 2017, MolIO contributors
+ Copyright (c) 2017, Mol* contributors
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
diff --git a/package.json b/package.json
index 44965fe03..d6ddc61c4 100644
--- a/package.json
+++ b/package.json
@@ -1,7 +1,7 @@
{
- "name": "molio",
+ "name": "mol-star",
"version": "0.1.0",
- "description": "Parsers for molecular data.",
+ "description": "Comprehensive molecular library.",
"main": "dist/molio.js",
"module": "dist/molio.esm.js",
"types": "src/index.d.ts",
diff --git a/src/mol-base/collections/_spec/equiv-index.spec.ts b/src/mol-base/collections/_spec/equiv-index.spec.ts
index 967bea3b0..d2d0a2856 100644
--- a/src/mol-base/collections/_spec/equiv-index.spec.ts
+++ b/src/mol-base/collections/_spec/equiv-index.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/_spec/iterators.spec.ts b/src/mol-base/collections/_spec/iterators.spec.ts
index 7c8cabe4a..a2e9a3536 100644
--- a/src/mol-base/collections/_spec/iterators.spec.ts
+++ b/src/mol-base/collections/_spec/iterators.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/_spec/sort.spec.ts b/src/mol-base/collections/_spec/sort.spec.ts
index 4b6773b76..4bccb03cb 100644
--- a/src/mol-base/collections/_spec/sort.spec.ts
+++ b/src/mol-base/collections/_spec/sort.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/chunked-array.ts b/src/mol-base/collections/chunked-array.ts
index 3ce84f5cd..0664a4c12 100644
--- a/src/mol-base/collections/chunked-array.ts
+++ b/src/mol-base/collections/chunked-array.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* from https://github.com/dsehnal/CIFTools.js
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-base/collections/database.ts b/src/mol-base/collections/database.ts
index 520d690cd..78818f8d8 100644
--- a/src/mol-base/collections/database.ts
+++ b/src/mol-base/collections/database.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/database/_spec/table.spec.ts b/src/mol-base/collections/database/_spec/table.spec.ts
index c39c73e4f..69e534231 100644
--- a/src/mol-base/collections/database/_spec/table.spec.ts
+++ b/src/mol-base/collections/database/_spec/table.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/database/column-helpers.ts b/src/mol-base/collections/database/column-helpers.ts
index b57deec09..b1645fb06 100644
--- a/src/mol-base/collections/database/column-helpers.ts
+++ b/src/mol-base/collections/database/column-helpers.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/database/column.ts b/src/mol-base/collections/database/column.ts
index f36ec2f97..80b9fc94c 100644
--- a/src/mol-base/collections/database/column.ts
+++ b/src/mol-base/collections/database/column.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/database/database.ts b/src/mol-base/collections/database/database.ts
index 0e4d378b4..e25041fc0 100644
--- a/src/mol-base/collections/database/database.ts
+++ b/src/mol-base/collections/database/database.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/database/table.ts b/src/mol-base/collections/database/table.ts
index 9d376f134..fa701fa39 100644
--- a/src/mol-base/collections/database/table.ts
+++ b/src/mol-base/collections/database/table.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/equivalence-classes.ts b/src/mol-base/collections/equivalence-classes.ts
index 5f32c4dc3..936d39b29 100644
--- a/src/mol-base/collections/equivalence-classes.ts
+++ b/src/mol-base/collections/equivalence-classes.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/hash-functions.ts b/src/mol-base/collections/hash-functions.ts
index 1394e40a4..00cae92c4 100644
--- a/src/mol-base/collections/hash-functions.ts
+++ b/src/mol-base/collections/hash-functions.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/hash-set.ts b/src/mol-base/collections/hash-set.ts
index b3ef13b9e..297b8eeb6 100644
--- a/src/mol-base/collections/hash-set.ts
+++ b/src/mol-base/collections/hash-set.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer.ts b/src/mol-base/collections/integer.ts
index aba4ca874..1abd46acc 100644
--- a/src/mol-base/collections/integer.ts
+++ b/src/mol-base/collections/integer.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/_spec/interval.spec.ts b/src/mol-base/collections/integer/_spec/interval.spec.ts
index 9aa97bdbd..037389133 100644
--- a/src/mol-base/collections/integer/_spec/interval.spec.ts
+++ b/src/mol-base/collections/integer/_spec/interval.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/_spec/linked-index.spec.ts b/src/mol-base/collections/integer/_spec/linked-index.spec.ts
index 9f811f2e9..743c39a3e 100644
--- a/src/mol-base/collections/integer/_spec/linked-index.spec.ts
+++ b/src/mol-base/collections/integer/_spec/linked-index.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/_spec/ordered-set.spec.ts b/src/mol-base/collections/integer/_spec/ordered-set.spec.ts
index 41b70f708..37d5ae0d4 100644
--- a/src/mol-base/collections/integer/_spec/ordered-set.spec.ts
+++ b/src/mol-base/collections/integer/_spec/ordered-set.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/_spec/segmentation.spec.ts b/src/mol-base/collections/integer/_spec/segmentation.spec.ts
index 6047b09c1..f91eff82a 100644
--- a/src/mol-base/collections/integer/_spec/segmentation.spec.ts
+++ b/src/mol-base/collections/integer/_spec/segmentation.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/_spec/sorted-array.spec.ts b/src/mol-base/collections/integer/_spec/sorted-array.spec.ts
index 679fca68e..db8cd15d7 100644
--- a/src/mol-base/collections/integer/_spec/sorted-array.spec.ts
+++ b/src/mol-base/collections/integer/_spec/sorted-array.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/_spec/tuple.spec.ts b/src/mol-base/collections/integer/_spec/tuple.spec.ts
index 45b02a0ef..37610b839 100644
--- a/src/mol-base/collections/integer/_spec/tuple.spec.ts
+++ b/src/mol-base/collections/integer/_spec/tuple.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/impl/interval.ts b/src/mol-base/collections/integer/impl/interval.ts
index 3a265b8b2..79b9b1273 100644
--- a/src/mol-base/collections/integer/impl/interval.ts
+++ b/src/mol-base/collections/integer/impl/interval.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/impl/ordered-set.ts b/src/mol-base/collections/integer/impl/ordered-set.ts
index 255c7772f..a5631f761 100644
--- a/src/mol-base/collections/integer/impl/ordered-set.ts
+++ b/src/mol-base/collections/integer/impl/ordered-set.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/impl/segmentation.ts b/src/mol-base/collections/integer/impl/segmentation.ts
index 357252a63..7caa3bfb8 100644
--- a/src/mol-base/collections/integer/impl/segmentation.ts
+++ b/src/mol-base/collections/integer/impl/segmentation.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/impl/sorted-array.ts b/src/mol-base/collections/integer/impl/sorted-array.ts
index 8056ad029..fe0d90565 100644
--- a/src/mol-base/collections/integer/impl/sorted-array.ts
+++ b/src/mol-base/collections/integer/impl/sorted-array.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/interval.ts b/src/mol-base/collections/integer/interval.ts
index 522d5eb73..dc5b0de83 100644
--- a/src/mol-base/collections/integer/interval.ts
+++ b/src/mol-base/collections/integer/interval.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/linked-index.ts b/src/mol-base/collections/integer/linked-index.ts
index 0433ba03d..94f119c9b 100644
--- a/src/mol-base/collections/integer/linked-index.ts
+++ b/src/mol-base/collections/integer/linked-index.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/ordered-set.ts b/src/mol-base/collections/integer/ordered-set.ts
index b0291432d..252064310 100644
--- a/src/mol-base/collections/integer/ordered-set.ts
+++ b/src/mol-base/collections/integer/ordered-set.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/segmentation.ts b/src/mol-base/collections/integer/segmentation.ts
index 3416c530b..51f5c5ecd 100644
--- a/src/mol-base/collections/integer/segmentation.ts
+++ b/src/mol-base/collections/integer/segmentation.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/sorted-array.ts b/src/mol-base/collections/integer/sorted-array.ts
index 701ea8ea3..082350612 100644
--- a/src/mol-base/collections/integer/sorted-array.ts
+++ b/src/mol-base/collections/integer/sorted-array.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/integer/tuple.ts b/src/mol-base/collections/integer/tuple.ts
index 19ad017c5..86cf4ea6b 100644
--- a/src/mol-base/collections/integer/tuple.ts
+++ b/src/mol-base/collections/integer/tuple.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/iterator.ts b/src/mol-base/collections/iterator.ts
index 02f302d82..7a139a850 100644
--- a/src/mol-base/collections/iterator.ts
+++ b/src/mol-base/collections/iterator.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/collections/sort.ts b/src/mol-base/collections/sort.ts
index 86525401a..e6eb6571e 100644
--- a/src/mol-base/collections/sort.ts
+++ b/src/mol-base/collections/sort.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/computation.ts b/src/mol-base/computation.ts
index 2a4d60751..d81b970a9 100644
--- a/src/mol-base/computation.ts
+++ b/src/mol-base/computation.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* Adapted from https://github.com/dsehnal/LiteMol
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-base/geometry/grid-lookup.ts b/src/mol-base/geometry/grid-lookup.ts
new file mode 100644
index 000000000..f7723b745
--- /dev/null
+++ b/src/mol-base/geometry/grid-lookup.ts
@@ -0,0 +1,2 @@
+// TODO: 3d grid lookup (use single cell for small sets), make bounding sphere part of the structure
+// TODO: assign radius to points?
\ No newline at end of file
diff --git a/src/mol-base/geometry/sphere.ts b/src/mol-base/geometry/sphere.ts
new file mode 100644
index 000000000..6135cbf4b
--- /dev/null
+++ b/src/mol-base/geometry/sphere.ts
@@ -0,0 +1 @@
+// TODO: rebranded vec4
\ No newline at end of file
diff --git a/src/mol-base/geometry/transform.ts b/src/mol-base/geometry/transform.ts
new file mode 100644
index 000000000..4eb1d64c6
--- /dev/null
+++ b/src/mol-base/geometry/transform.ts
@@ -0,0 +1,27 @@
+/**
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ *
+ * @author David Sehnal <david.sehnal@gmail.com>
+ */
+
+import { Mat4 } from '../math/linear-algebra-3d'
+
+interface Transform extends Readonly<{
+ transform: Mat4,
+ // cache the inverse of the transform
+ inverse: Mat4,
+ // optimize the identity case
+ isIdentity: boolean
+}> { }
+
+namespace Transform {
+ export function isIdentity(m: Mat4) {
+ throw 'nyi'
+ }
+
+ export function isRotationAndTranslation(m: Mat4) {
+ throw 'nyi'
+ }
+}
+
+export default Transform
\ No newline at end of file
diff --git a/src/mol-base/math/linear-algebra.ts b/src/mol-base/math/linear-algebra-3d.ts
similarity index 99%
rename from src/mol-base/math/linear-algebra.ts
rename to src/mol-base/math/linear-algebra-3d.ts
index 909c199ba..cfbf4010a 100644
--- a/src/mol-base/math/linear-algebra.ts
+++ b/src/mol-base/math/linear-algebra-3d.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/utils/bit-flags.ts b/src/mol-base/utils/bit-flags.ts
index acf1fc2f5..0cf3b761d 100644
--- a/src/mol-base/utils/bit-flags.ts
+++ b/src/mol-base/utils/bit-flags.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/utils/scheduler.ts b/src/mol-base/utils/scheduler.ts
index d06195904..85ad75eff 100644
--- a/src/mol-base/utils/scheduler.ts
+++ b/src/mol-base/utils/scheduler.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/utils/time.ts b/src/mol-base/utils/time.ts
index 5a4290f13..a0ee3abfd 100644
--- a/src/mol-base/utils/time.ts
+++ b/src/mol-base/utils/time.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-base/utils/uuid.ts b/src/mol-base/utils/uuid.ts
index ed7728d44..29c7d24de 100644
--- a/src/mol-base/utils/uuid.ts
+++ b/src/mol-base/utils/uuid.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure.ts b/src/mol-data/structure.ts
index 5542ea399..38d5890d5 100644
--- a/src/mol-data/structure.ts
+++ b/src/mol-data/structure.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/_spec/atom-set.spec.ts b/src/mol-data/structure/_spec/atom-set.spec.ts
index ace171796..03ca32556 100644
--- a/src/mol-data/structure/_spec/atom-set.spec.ts
+++ b/src/mol-data/structure/_spec/atom-set.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/model.ts b/src/mol-data/structure/model.ts
index 1fd765347..b26cbbfbf 100644
--- a/src/mol-data/structure/model.ts
+++ b/src/mol-data/structure/model.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/model/constants.ts b/src/mol-data/structure/model/constants.ts
index 03072eb6f..58ada8080 100644
--- a/src/mol-data/structure/model/constants.ts
+++ b/src/mol-data/structure/model/constants.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-data/structure/model/format.ts b/src/mol-data/structure/model/format.ts
index e1878bbdb..3f376d1fe 100644
--- a/src/mol-data/structure/model/format.ts
+++ b/src/mol-data/structure/model/format.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/model/formats/mmcif.ts b/src/mol-data/structure/model/formats/mmcif.ts
index 5f6cf3c9c..377a1c613 100644
--- a/src/mol-data/structure/model/formats/mmcif.ts
+++ b/src/mol-data/structure/model/formats/mmcif.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/model/model.ts b/src/mol-data/structure/model/model.ts
index 9cdfd3787..c393d2452 100644
--- a/src/mol-data/structure/model/model.ts
+++ b/src/mol-data/structure/model/model.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/model/properties/computed.ts b/src/mol-data/structure/model/properties/computed.ts
index 0cb9039cc..39896495f 100644
--- a/src/mol-data/structure/model/properties/computed.ts
+++ b/src/mol-data/structure/model/properties/computed.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/model/properties/conformation.ts b/src/mol-data/structure/model/properties/conformation.ts
index 2d4156863..c53ab0844 100644
--- a/src/mol-data/structure/model/properties/conformation.ts
+++ b/src/mol-data/structure/model/properties/conformation.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/model/properties/format-specific.ts b/src/mol-data/structure/model/properties/format-specific.ts
index 2a7bb4398..a978e6aca 100644
--- a/src/mol-data/structure/model/properties/format-specific.ts
+++ b/src/mol-data/structure/model/properties/format-specific.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/model/properties/hierarchy.ts b/src/mol-data/structure/model/properties/hierarchy.ts
index 365c3943a..a8062be00 100644
--- a/src/mol-data/structure/model/properties/hierarchy.ts
+++ b/src/mol-data/structure/model/properties/hierarchy.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/model/properties/transforms.ts b/src/mol-data/structure/model/properties/transforms.ts
index 9c6fdc465..42d9b7797 100644
--- a/src/mol-data/structure/model/properties/transforms.ts
+++ b/src/mol-data/structure/model/properties/transforms.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/model/utils/hierarchy-keys.ts b/src/mol-data/structure/model/utils/hierarchy-keys.ts
index 0b00badb9..cc0f4821a 100644
--- a/src/mol-data/structure/model/utils/hierarchy-keys.ts
+++ b/src/mol-data/structure/model/utils/hierarchy-keys.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/query.ts b/src/mol-data/structure/query.ts
index 4a8bf6150..f876fabb4 100644
--- a/src/mol-data/structure/query.ts
+++ b/src/mol-data/structure/query.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/query/generators.ts b/src/mol-data/structure/query/generators.ts
index 9a30d0a3d..0479437b9 100644
--- a/src/mol-data/structure/query/generators.ts
+++ b/src/mol-data/structure/query/generators.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/query/properties.ts b/src/mol-data/structure/query/properties.ts
index 18bf1d5cb..858ebb8fb 100644
--- a/src/mol-data/structure/query/properties.ts
+++ b/src/mol-data/structure/query/properties.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/query/query.ts b/src/mol-data/structure/query/query.ts
index f3bd96b69..20c569b6d 100644
--- a/src/mol-data/structure/query/query.ts
+++ b/src/mol-data/structure/query/query.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/query/selection.ts b/src/mol-data/structure/query/selection.ts
index 126657247..48f96ec49 100644
--- a/src/mol-data/structure/query/selection.ts
+++ b/src/mol-data/structure/query/selection.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/structure.ts b/src/mol-data/structure/structure.ts
index cc8bf49f3..1ceba8e5a 100644
--- a/src/mol-data/structure/structure.ts
+++ b/src/mol-data/structure/structure.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/structure/atom.ts b/src/mol-data/structure/structure/atom.ts
index f40e08de9..cdc5b1302 100644
--- a/src/mol-data/structure/structure/atom.ts
+++ b/src/mol-data/structure/structure/atom.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/structure/atom/set.ts b/src/mol-data/structure/structure/atom/set.ts
index ecf186439..93a217794 100644
--- a/src/mol-data/structure/structure/atom/set.ts
+++ b/src/mol-data/structure/structure/atom/set.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/structure/atom/set/builder.ts b/src/mol-data/structure/structure/atom/set/builder.ts
index 7c27a2fe8..2d51dc9c5 100644
--- a/src/mol-data/structure/structure/atom/set/builder.ts
+++ b/src/mol-data/structure/structure/atom/set/builder.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/structure/atom/set/impl.ts b/src/mol-data/structure/structure/atom/set/impl.ts
index ebd2fcf4a..dbb097482 100644
--- a/src/mol-data/structure/structure/atom/set/impl.ts
+++ b/src/mol-data/structure/structure/atom/set/impl.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/structure/atom/set/properties.ts b/src/mol-data/structure/structure/atom/set/properties.ts
index 6e5dfe593..03ae27d16 100644
--- a/src/mol-data/structure/structure/atom/set/properties.ts
+++ b/src/mol-data/structure/structure/atom/set/properties.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/structure/operator.ts b/src/mol-data/structure/structure/operator.ts
index b2e5e7811..dd1df5c18 100644
--- a/src/mol-data/structure/structure/operator.ts
+++ b/src/mol-data/structure/structure/operator.ts
@@ -1,10 +1,10 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
-import { Mat4 } from 'mol-base/math/linear-algebra'
+import { Mat4 } from 'mol-base/math/linear-algebra-3d'
interface Operator extends Readonly<{
name: string,
diff --git a/src/mol-data/structure/structure/structure.ts b/src/mol-data/structure/structure/structure.ts
index 14c10d4c7..8917e842b 100644
--- a/src/mol-data/structure/structure/structure.ts
+++ b/src/mol-data/structure/structure/structure.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-data/structure/structure/unit.ts b/src/mol-data/structure/structure/unit.ts
index 5ffc3d6ee..a90e87c24 100644
--- a/src/mol-data/structure/structure/unit.ts
+++ b/src/mol-data/structure/structure/unit.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/_spec/cif.spec.ts b/src/mol-io/reader/_spec/cif.spec.ts
index cf35dc3e9..24ee319df 100644
--- a/src/mol-io/reader/_spec/cif.spec.ts
+++ b/src/mol-io/reader/_spec/cif.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/_spec/column.spec.ts b/src/mol-io/reader/_spec/column.spec.ts
index 27f0a4e8b..f7df7dfc8 100644
--- a/src/mol-io/reader/_spec/column.spec.ts
+++ b/src/mol-io/reader/_spec/column.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-io/reader/_spec/gro.spec.ts b/src/mol-io/reader/_spec/gro.spec.ts
index 8f78668d5..e13fcf713 100644
--- a/src/mol-io/reader/_spec/gro.spec.ts
+++ b/src/mol-io/reader/_spec/gro.spec.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-io/reader/cif.ts b/src/mol-io/reader/cif.ts
index 1a57f99fe..7e2782710 100644
--- a/src/mol-io/reader/cif.ts
+++ b/src/mol-io/reader/cif.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/cif/binary/decoder.ts b/src/mol-io/reader/cif/binary/decoder.ts
index a9e43acbe..d1620bfac 100644
--- a/src/mol-io/reader/cif/binary/decoder.ts
+++ b/src/mol-io/reader/cif/binary/decoder.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* From CIFTools.js
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-io/reader/cif/binary/encoding.ts b/src/mol-io/reader/cif/binary/encoding.ts
index 6bf50cf1a..f36abc527 100644
--- a/src/mol-io/reader/cif/binary/encoding.ts
+++ b/src/mol-io/reader/cif/binary/encoding.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* From CIFTools.js
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-io/reader/cif/binary/field.ts b/src/mol-io/reader/cif/binary/field.ts
index 5d08ce218..c11f1909c 100644
--- a/src/mol-io/reader/cif/binary/field.ts
+++ b/src/mol-io/reader/cif/binary/field.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/cif/binary/parser.ts b/src/mol-io/reader/cif/binary/parser.ts
index 0225eab25..0d0614a76 100644
--- a/src/mol-io/reader/cif/binary/parser.ts
+++ b/src/mol-io/reader/cif/binary/parser.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/cif/data-model.ts b/src/mol-io/reader/cif/data-model.ts
index 315373162..2f72463e9 100644
--- a/src/mol-io/reader/cif/data-model.ts
+++ b/src/mol-io/reader/cif/data-model.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/cif/schema.ts b/src/mol-io/reader/cif/schema.ts
index 5f1c5aa6b..c4b0dc333 100644
--- a/src/mol-io/reader/cif/schema.ts
+++ b/src/mol-io/reader/cif/schema.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/cif/schema/dic.ts b/src/mol-io/reader/cif/schema/dic.ts
index 712a667f4..09e0d5b60 100644
--- a/src/mol-io/reader/cif/schema/dic.ts
+++ b/src/mol-io/reader/cif/schema/dic.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
diff --git a/src/mol-io/reader/cif/schema/mmcif.ts b/src/mol-io/reader/cif/schema/mmcif.ts
index 9f478aa5c..42aabd396 100644
--- a/src/mol-io/reader/cif/schema/mmcif.ts
+++ b/src/mol-io/reader/cif/schema/mmcif.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/cif/schema/utils.ts b/src/mol-io/reader/cif/schema/utils.ts
index 072257add..eab1cb1d7 100644
--- a/src/mol-io/reader/cif/schema/utils.ts
+++ b/src/mol-io/reader/cif/schema/utils.ts
@@ -116,7 +116,7 @@ function getCode (d: Data.Frame, ctx: FrameData): [string, string[]]|undefined {
}
const header = `/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Your friendly code generator
*/
diff --git a/src/mol-io/reader/cif/text/field.ts b/src/mol-io/reader/cif/text/field.ts
index 2dd357812..1628da3e4 100644
--- a/src/mol-io/reader/cif/text/field.ts
+++ b/src/mol-io/reader/cif/text/field.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/cif/text/parser.ts b/src/mol-io/reader/cif/text/parser.ts
index e657ee4eb..cf705c7ae 100644
--- a/src/mol-io/reader/cif/text/parser.ts
+++ b/src/mol-io/reader/cif/text/parser.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/common/binary/column.ts b/src/mol-io/reader/common/binary/column.ts
index 28ce9a001..0a8bc85d7 100644
--- a/src/mol-io/reader/common/binary/column.ts
+++ b/src/mol-io/reader/common/binary/column.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
\ No newline at end of file
diff --git a/src/mol-io/reader/common/text/column/fixed.ts b/src/mol-io/reader/common/text/column/fixed.ts
index 6438f3728..d279f3f2e 100644
--- a/src/mol-io/reader/common/text/column/fixed.ts
+++ b/src/mol-io/reader/common/text/column/fixed.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/common/text/column/token.ts b/src/mol-io/reader/common/text/column/token.ts
index e80027e92..e4dd79fe3 100644
--- a/src/mol-io/reader/common/text/column/token.ts
+++ b/src/mol-io/reader/common/text/column/token.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/mol-io/reader/common/text/number-parser.ts b/src/mol-io/reader/common/text/number-parser.ts
index f7b097f82..664b0f04c 100644
--- a/src/mol-io/reader/common/text/number-parser.ts
+++ b/src/mol-io/reader/common/text/number-parser.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* from https://github.com/dsehnal/CIFTools.js
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-io/reader/common/text/tokenizer.ts b/src/mol-io/reader/common/text/tokenizer.ts
index 2d48a3fc1..d8ddc0746 100644
--- a/src/mol-io/reader/common/text/tokenizer.ts
+++ b/src/mol-io/reader/common/text/tokenizer.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* mostly from https://github.com/dsehnal/CIFTools.js
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-io/reader/gro/parser.ts b/src/mol-io/reader/gro/parser.ts
index 321057823..531a8b275 100644
--- a/src/mol-io/reader/gro/parser.ts
+++ b/src/mol-io/reader/gro/parser.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-io/reader/gro/schema.d.ts b/src/mol-io/reader/gro/schema.d.ts
index 8f9cfdf58..bd871b6ff 100644
--- a/src/mol-io/reader/gro/schema.d.ts
+++ b/src/mol-io/reader/gro/schema.d.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-io/reader/mol2/schema.d.ts b/src/mol-io/reader/mol2/schema.d.ts
index 8bbf35cec..fbf458ce8 100644
--- a/src/mol-io/reader/mol2/schema.d.ts
+++ b/src/mol-io/reader/mol2/schema.d.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
*/
diff --git a/src/mol-io/reader/result.ts b/src/mol-io/reader/result.ts
index a6b29f020..4eb76dd37 100644
--- a/src/mol-io/reader/result.ts
+++ b/src/mol-io/reader/result.ts
@@ -1,5 +1,5 @@
/*
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* from https://github.com/dsehnal/CIFTools.js
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-io/utils/msgpack/decode.ts b/src/mol-io/utils/msgpack/decode.ts
index 3c43aefcb..5d465550e 100644
--- a/src/mol-io/utils/msgpack/decode.ts
+++ b/src/mol-io/utils/msgpack/decode.ts
@@ -1,5 +1,5 @@
/*
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* Adapted from https://github.com/rcsb/mmtf-javascript
* @author Alexander Rose <alexander.rose@weirdbyte.de>
diff --git a/src/mol-io/utils/msgpack/encode.ts b/src/mol-io/utils/msgpack/encode.ts
index 7056ceebe..fb79a6549 100644
--- a/src/mol-io/utils/msgpack/encode.ts
+++ b/src/mol-io/utils/msgpack/encode.ts
@@ -1,5 +1,5 @@
/*
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* Adapted from https://github.com/rcsb/mmtf-javascript
* @author Alexander Rose <alexander.rose@weirdbyte.de>
diff --git a/src/mol-io/utils/short-string-pool.ts b/src/mol-io/utils/short-string-pool.ts
index 870284bcc..58858c1a8 100644
--- a/src/mol-io/utils/short-string-pool.ts
+++ b/src/mol-io/utils/short-string-pool.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* from https://github.com/dsehnal/CIFTools.js
* @author David Sehnal <david.sehnal@gmail.com>
diff --git a/src/mol-io/utils/utf8.ts b/src/mol-io/utils/utf8.ts
index ff7c8a6fb..74f35811b 100644
--- a/src/mol-io/utils/utf8.ts
+++ b/src/mol-io/utils/utf8.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* Adapted from https://github.com/rcsb/mmtf-javascript
* @author Alexander Rose <alexander.rose@weirdbyte.de>
diff --git a/src/perf-tests/structure.ts b/src/perf-tests/structure.ts
index a1d996834..23300ac6a 100644
--- a/src/perf-tests/structure.ts
+++ b/src/perf-tests/structure.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author David Sehnal <david.sehnal@gmail.com>
*/
diff --git a/src/script.ts b/src/script.ts
index 8207880be..05b1c962b 100644
--- a/src/script.ts
+++ b/src/script.ts
@@ -1,5 +1,5 @@
/**
- * Copyright (c) 2017 molio contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017 mol* contributors, licensed under MIT, See LICENSE file for more info.
*
* @author Alexander Rose <alexander.rose@weirdbyte.de>
* @author David Sehnal <david.sehnal@gmail.com>
--
GitLab