From b08c35b9fb6eccafc53ffcaa0aa9d1abf83f6435 Mon Sep 17 00:00:00 2001
From: Alexander Rose <alex.rose@rcsb.org>
Date: Tue, 31 Jul 2018 11:17:43 -0700
Subject: [PATCH] fixed pentose/star alignment
---
.../structure/visual/carbohydrate-symbol-mesh.ts | 2 +-
src/mol-view/stage.ts | 4 ++--
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/mol-geo/representation/structure/visual/carbohydrate-symbol-mesh.ts b/src/mol-geo/representation/structure/visual/carbohydrate-symbol-mesh.ts
index 1459b499d..3430597c8 100644
--- a/src/mol-geo/representation/structure/visual/carbohydrate-symbol-mesh.ts
+++ b/src/mol-geo/representation/structure/visual/carbohydrate-symbol-mesh.ts
@@ -84,7 +84,7 @@ async function createCarbohydrateSymbolMesh(ctx: RuntimeContext, structure: Stru
builder.addBox(t, { width: side, height: side / 2, depth: side })
break
case SaccharideShapes.FilledStar:
- centerAlign(cGeo.center, cGeo.normal, cGeo.direction)
+ centerAlign(cGeo.center, cGeo.direction, cGeo.normal)
builder.addStar(t, { outerRadius: side, innerRadius: side / 2, thickness: side / 2, pointCount: 5 })
break
case SaccharideShapes.FilledDiamond:
diff --git a/src/mol-view/stage.ts b/src/mol-view/stage.ts
index 1317b4024..96a24b36b 100644
--- a/src/mol-view/stage.ts
+++ b/src/mol-view/stage.ts
@@ -78,7 +78,7 @@ export class Stage {
// this.loadPdbid('1hrv') // viral assembly
// this.loadPdbid('1rb8') // virus
// this.loadPdbid('1blu') // metal coordination
- this.loadPdbid('3pqr') // inter unit bonds, two polymer chains, ligands, water, carbohydrates linked to protein
+ // this.loadPdbid('3pqr') // inter unit bonds, two polymer chains, ligands, water, carbohydrates linked to protein
// this.loadPdbid('4v5a') // ribosome
// this.loadPdbid('3j3q') // ...
// this.loadPdbid('2np2') // dna
@@ -99,7 +99,7 @@ export class Stage {
// this.loadPdbid('2zex') // contains carbohydrate polymer
// this.loadPdbid('3sgj') // contains carbohydrate polymer
// this.loadPdbid('3ina') // contains GlcN and IdoA
- // this.loadPdbid('1umz') // contains Xyl (Xyloglucan)
+ this.loadPdbid('1umz') // contains Xyl (Xyloglucan)
// this.loadPdbid('1mfb') // contains Abe
// this.loadPdbid('2gdu') // contains sucrose
// this.loadPdbid('2fnc') // contains maltotriose
--
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