From cd30d559b2fccdc6a88099b3d2b2b248619ef057 Mon Sep 17 00:00:00 2001
From: Alexander Rose <alexander.rose@weirdbyte.de>
Date: Sun, 24 Feb 2019 12:55:26 -0800
Subject: [PATCH] use bcif
---
src/tests/browser/render-structure.ts | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/src/tests/browser/render-structure.ts b/src/tests/browser/render-structure.ts
index c601c504f..9dae8a78c 100644
--- a/src/tests/browser/render-structure.ts
+++ b/src/tests/browser/render-structure.ts
@@ -40,7 +40,8 @@ async function downloadCif(url: string, isBinary: boolean) {
}
async function downloadFromPdb(pdb: string) {
- const parsed = await downloadCif(`https://files.rcsb.org/download/${pdb}.cif`, false);
+ // const parsed = await downloadCif(`https://files.rcsb.org/download/${pdb}.cif`, false);
+ const parsed = await downloadCif(`https://webchem.ncbr.muni.cz/ModelServer/static/bcif/${pdb}`, true);
return parsed.blocks[0];
}
@@ -61,7 +62,7 @@ function getCartoonRepr() {
}
async function init() {
- const cif = await downloadFromPdb('1d66')
+ const cif = await downloadFromPdb('3j3q')
const models = await getModels(cif)
console.time('computeModelDSSP')
const secondaryStructure = computeModelDSSP(models[0].atomicHierarchy, models[0].atomicConformation)
--
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