From ce2544b9f38af458a619ed2d20d826c16889d7e2 Mon Sep 17 00:00:00 2001
From: Alexander Rose <alexander.rose@weirdbyte.de>
Date: Sat, 18 Dec 2021 14:40:45 -0800
Subject: [PATCH] add model-archive viewer helpers
---
CHANGELOG.md | 7 +++++--
src/apps/viewer/index.html | 3 +++
src/apps/viewer/index.ts | 13 +++++++++++++
3 files changed, 21 insertions(+), 2 deletions(-)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 0ad20a0e6..1f834fc28 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -10,8 +10,11 @@ Note that since we don't clearly distinguish between a public and private interf
- Fix flickering during marking with camera at rest
- Enable ``aromaticBonds`` in structure representations by default
- Add ``PluginConfig.Structure.DefaultRepresentationPreset``
-- Add ModelArchive schema extensions (e.g., AlphaFold uses it for the pLDDT score)
-- Add ModelArchive option in DownloadStructure action
+- Add ModelArchive support
+ - schema extensions (e.g., AlphaFold uses it for the pLDDT score)
+ - ModelArchive option in DownloadStructure action
+ - ``model-archive`` GET parameter for Viewer app
+ - ``Viewer.loadModelArchive`` method
- Improve support for loading AlphaFold structures
- Automatic coloring by pLDDT
- AlphaFold DB option in DownloadStructure action
diff --git a/src/apps/viewer/index.html b/src/apps/viewer/index.html
index 57bd5d873..6de419c98 100644
--- a/src/apps/viewer/index.html
+++ b/src/apps/viewer/index.html
@@ -93,6 +93,9 @@
var afdb = getParam('afdb', '[^&]+').trim();
if (afdb) viewer.loadAfdb(afdb);
+
+ var modelArchive = getParam('model-archive', '[^&]+').trim();
+ if (modelArchive) viewer.loadModelArchive(modelArchive);
</script>
<!-- __MOLSTAR_ANALYTICS__ -->
</body>
diff --git a/src/apps/viewer/index.ts b/src/apps/viewer/index.ts
index bac1aa6b2..0ec98c510 100644
--- a/src/apps/viewer/index.ts
+++ b/src/apps/viewer/index.ts
@@ -274,6 +274,19 @@ export class Viewer {
}));
}
+ loadModelArchive(id: string) {
+ const params = DownloadStructure.createDefaultParams(this.plugin.state.data.root.obj!, this.plugin);
+ return this.plugin.runTask(this.plugin.state.data.applyAction(DownloadStructure, {
+ source: {
+ name: 'modelarchive' as const,
+ params: {
+ id,
+ options: params.source.params.options,
+ }
+ }
+ }));
+ }
+
/**
* @example Load X-ray density from volume server
viewer.loadVolumeFromUrl({
--
GitLab