From e226f27041bec408ceee09b8bf982106d1950cf9 Mon Sep 17 00:00:00 2001
From: Alexander Rose <alex.rose@rcsb.org>
Date: Mon, 22 Jul 2019 12:04:27 -0700
Subject: [PATCH] fixed wrong property use in seq widget
---
src/mol-plugin/ui/sequence.tsx | 9 +++++++--
src/mol-plugin/ui/sequence/polymer.ts | 2 +-
2 files changed, 8 insertions(+), 3 deletions(-)
diff --git a/src/mol-plugin/ui/sequence.tsx b/src/mol-plugin/ui/sequence.tsx
index 82cbdd76b..0f7d6f5bd 100644
--- a/src/mol-plugin/ui/sequence.tsx
+++ b/src/mol-plugin/ui/sequence.tsx
@@ -10,7 +10,7 @@ import { PluginUIComponent } from './base';
import { StateTreeSpine } from '../../mol-state/tree/spine';
import { PluginStateObject as SO } from '../state/objects';
import { Sequence } from './sequence/sequence';
-import { Structure, StructureElement, StructureProperties as SP } from '../../mol-model/structure';
+import { Structure, StructureElement, StructureProperties as SP, Unit } from '../../mol-model/structure';
import { SequenceWrapper } from './sequence/wrapper';
import { PolymerSequenceWrapper } from './sequence/polymer';
import { StructureElementSelectionManager } from '../util/structure-element-selection';
@@ -75,7 +75,12 @@ function getChainOptions(structure: Structure, entityId: string) {
const id = unit.invariantId
if (seen.has(id)) continue
- let label = `${SP.chain.label_asym_id(l)}: ${SP.chain.auth_asym_id(l)}`
+ let label = ''
+ if (Unit.isAtomic(unit)) {
+ label = `${SP.chain.label_asym_id(l)}: ${SP.chain.auth_asym_id(l)}`
+ } else {
+ label = `${SP.coarse.asym_id(l)}`
+ }
if (SP.entity.type(l) === 'water') {
const count = water.get(label) || 1
water.set(label, count + 1)
diff --git a/src/mol-plugin/ui/sequence/polymer.ts b/src/mol-plugin/ui/sequence/polymer.ts
index 14e8bf64d..d31ff0c4c 100644
--- a/src/mol-plugin/ui/sequence/polymer.ts
+++ b/src/mol-plugin/ui/sequence/polymer.ts
@@ -72,7 +72,7 @@ export class PolymerSequenceWrapper extends SequenceWrapper<StructureUnit> {
this.missing = data.unit.model.properties.missingResidues
this.modelNum = data.unit.model.modelNum
- this.asymId = SP.chain.label_asym_id(l)
+ this.asymId = Unit.isAtomic(data.unit) ? SP.chain.label_asym_id(l) : SP.coarse.asym_id(l)
const missing: number[] = []
for (let i = 0; i < length; ++i) {
--
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