diff --git a/src/mol-io/reader/cif/schema/bird.ts b/src/mol-io/reader/cif/schema/bird.ts index ff10cb3d5755f42f4ba25548c4efd11203292a7c..ed259793046073c328c886be6c57a1b327c7563b 100644 --- a/src/mol-io/reader/cif/schema/bird.ts +++ b/src/mol-io/reader/cif/schema/bird.ts @@ -1,7 +1,7 @@ /** * Copyright (c) 2017-2019 mol* contributors, licensed under MIT, See LICENSE file for more info. * - * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.312, IHM 1.0, CARB draft. + * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.313, IHM 1.01, CARB draft. * * @author molstar/ciftools package */ diff --git a/src/mol-io/reader/cif/schema/ccd.ts b/src/mol-io/reader/cif/schema/ccd.ts index 4c8314a2db3de3cb0508b41cca991c9c19b35646..dc3b3f5acf3ffe589eb162a8a09baa3ede6d2599 100644 --- a/src/mol-io/reader/cif/schema/ccd.ts +++ b/src/mol-io/reader/cif/schema/ccd.ts @@ -1,7 +1,7 @@ /** * Copyright (c) 2017-2019 mol* contributors, licensed under MIT, See LICENSE file for more info. * - * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.312, IHM 1.0, CARB draft. + * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.313, IHM 1.01, CARB draft. * * @author molstar/ciftools package */ diff --git a/src/mol-io/reader/cif/schema/mmcif.ts b/src/mol-io/reader/cif/schema/mmcif.ts index 7fa520eee83bca9a2a66172f73a97d715e72a297..9f3e6626305d4305b0f94504be3160689de37f4f 100644 --- a/src/mol-io/reader/cif/schema/mmcif.ts +++ b/src/mol-io/reader/cif/schema/mmcif.ts @@ -1,7 +1,7 @@ /** * Copyright (c) 2017-2019 mol* contributors, licensed under MIT, See LICENSE file for more info. * - * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.312, IHM 1.0, CARB draft. + * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.313, IHM 1.01, CARB draft. * * @author molstar/ciftools package */ @@ -1471,6 +1471,62 @@ export const mmCIF_Schema = { */ 'space_group_name_H-M': str, }, + /** + * These are internal RCSB records to keep track of data processing + * and status of the entry. + */ + pdbx_database_status: { + /** + * Code for status of file. + */ + status_code: Aliased<'PROC' | 'WAIT' | 'REL' | 'HOLD' | 'HPUB' | 'REFI' | 'OBS' | 'WDRN' | 'AUTH' | 'POLC' | 'REPL' | 'AUCO' | 'TRSF' | 'RMVD' | 'DEL' | 'REV' | 'UPD' | 'BIB'>(str), + /** + * Code for status of structure factor file. + */ + status_code_sf: Aliased<'PROC' | 'WAIT' | 'REL' | 'HOLD' | 'HPUB' | 'OBS' | 'WDRN' | 'AUTH' | 'POLC' | 'REPL' | 'RMVD'>(str), + /** + * Code for status of NMR constraints file. + */ + status_code_mr: Aliased<'PROC' | 'WAIT' | 'REL' | 'HOLD' | 'HPUB' | 'OBS' | 'WDRN' | 'AUTH' | 'POLC' | 'REPL' | 'RMVD'>(str), + /** + * The value of _pdbx_database_status.entry_id identifies the data block. + */ + entry_id: str, + /** + * The date of initial deposition. (The first message for + * deposition has been received.) + */ + recvd_initial_deposition_date: str, + /** + * This code indicates whether the entry belongs to + * Structural Genomics Project. + */ + SG_entry: Aliased<'Y' | 'N'>(str), + /** + * The site where the file was deposited. + */ + deposit_site: Aliased<'NDB' | 'RCSB' | 'PDBE' | 'PDBJ' | 'BMRB' | 'BNL'>(str), + /** + * The site where the file was deposited. + */ + process_site: Aliased<'NDB' | 'RCSB' | 'PDBE' | 'PDBJ' | 'BNL'>(str), + /** + * Code for status of chemical shift data file. + */ + status_code_cs: Aliased<'PROC' | 'WAIT' | 'AUTH' | 'POLC' | 'REPL' | 'REL' | 'HOLD' | 'HPUB' | 'OBS' | 'RMVD' | 'WDRN'>(str), + /** + * The methods development category in which this + * entry has been placed. + */ + methods_development_category: Aliased<'CAPRI' | 'CASP' | 'CASD-NMR' | 'FoldIt' | 'GPCR Dock' | 'D3R' | 'RNA-Puzzles'>(str), + /** + * A flag indicating that the entry is compatible with the PDB format. + * + * A value of 'N' indicates that the no PDB format data file is + * corresponding to this entry is available in the PDB archive. + */ + pdb_format_compatible: Aliased<'Y' | 'N'>(str), + }, /** * The PDBX_NONPOLY_SCHEME category provides residue level nomenclature * mapping for non-polymer entities. @@ -1519,6 +1575,28 @@ export const mmCIF_Schema = { */ pdb_ins_code: str, }, + /** + * Data items in PDBX_DATABASE_RELATED contain references to entries + * that are related to the this entry. + */ + pdbx_database_related: { + /** + * The name of the database containing the related entry. + */ + db_name: str, + /** + * A description of the related entry. + */ + details: str, + /** + * The identifying code in the related database. + */ + db_id: str, + /** + * The identifying content type of the related entry. + */ + content_type: Aliased<'minimized average structure' | 'representative structure' | 'ensemble' | 'derivative structure' | 'native structure' | 'associated EM volume' | 'other EM volume' | 'associated NMR restraints' | 'associated structure factors' | 'associated SAS data' | 'protein target sequence and/or protocol data' | 'split' | 're-refinement' | 'complete structure' | 'unspecified' | 'other'>(str), + }, /** * Data items in the CHEM_COMP_IDENTIFIER category provide * identifiers for chemical components. @@ -2971,7 +3049,7 @@ export const mmCIF_Schema = { /** * The name of the database containing the dataset entry. */ - db_name: Aliased<'PDB' | 'BMRB' | 'EMDB' | 'EMPIAR' | 'SASBDB' | 'PRIDE' | 'MODEL ARCHIVE' | 'MASSIVE' | 'BioGRID' | 'Other'>(str), + db_name: Aliased<'PDB' | 'PDB-Dev' | 'BMRB' | 'EMDB' | 'EMPIAR' | 'SASBDB' | 'PRIDE' | 'MODEL ARCHIVE' | 'MASSIVE' | 'BioGRID' | 'Other'>(str), /** * The accession code for the database entry. */