/** * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info. * * @author David Sehnal <david.sehnal@gmail.com> */ import { OrderedSet } from '../../../../../mol-data/int'; import { SIFTSMapping as BestDatabaseSequenceMappingProp } from '../../../../../mol-model-props/sequence/sifts-mapping'; import { BestDatabaseSequenceMappingColorThemeProvider } from '../../../../../mol-model-props/sequence/themes/best-database-mapping'; import { Loci } from '../../../../../mol-model/loci'; import { StructureElement } from '../../../../../mol-model/structure'; import { ParamDefinition as PD } from '../../../../../mol-util/param-definition'; import { PluginBehavior } from '../../../behavior'; export const BestDatabaseSequenceMapping = PluginBehavior.create<{ autoAttach: boolean, showTooltip: boolean }>({ name: 'best-sequence-database-mapping-prop', category: 'custom-props', display: { name: 'Best Database Sequence Mapping' }, ctor: class extends PluginBehavior.Handler<{ autoAttach: boolean, showTooltip: boolean }> { private provider = BestDatabaseSequenceMappingProp.Provider; private labelProvider = { label: (loci: Loci): string | undefined => { if (!this.params.showTooltip) return; return bestDatabaseSequenceMappingLabel(loci); } }; update(p: { autoAttach: boolean, showTooltip: boolean }) { const updated = ( this.params.autoAttach !== p.autoAttach || this.params.showTooltip !== p.showTooltip ); this.params.autoAttach = p.autoAttach; this.params.showTooltip = p.showTooltip; this.ctx.customStructureProperties.setDefaultAutoAttach(this.provider.descriptor.name, this.params.autoAttach); return updated; } register(): void { this.ctx.customModelProperties.register(this.provider, this.params.autoAttach); this.ctx.representation.structure.themes.colorThemeRegistry.add(BestDatabaseSequenceMappingColorThemeProvider); this.ctx.managers.lociLabels.addProvider(this.labelProvider); } unregister() { this.ctx.customModelProperties.unregister(this.provider.descriptor.name); this.ctx.representation.structure.themes.colorThemeRegistry.remove(BestDatabaseSequenceMappingColorThemeProvider); this.ctx.managers.lociLabels.removeProvider(this.labelProvider); } }, params: () => ({ autoAttach: PD.Boolean(true), showTooltip: PD.Boolean(true) }) }); // function bestDatabaseSequenceMappingLabel(loci: Loci): string | undefined { if (loci.kind === 'element-loci') { if (loci.elements.length === 0) return; const e = loci.elements[0]; const u = e.unit; const se = StructureElement.Location.create(loci.structure, u, u.elements[OrderedSet.getAt(e.indices, 0)]); return BestDatabaseSequenceMappingProp.getLabel(se); } }