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Commit 7c33f4d0 authored by Alexander Rose's avatar Alexander Rose
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updated rcsb assembly symmetry graphql schema

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package-lock.json
+1.25 KiB (+0%)
View file @ 7c33f4d0
File suppressed by a .gitattributes entry or the file's encoding is unsupported.
src/mol-model-props/rcsb/assembly-symmetry.ts
+ 9
− 9
View file @ 7c33f4d0
......@@ -44,18 +44,17 @@ function createDatabaseFromJson(assemblies: ReadonlyArray<AssemblySymmetryGraphQ
let id = 1 // start feature ids at 1
let clusterCount = 0
for (let i = 0, il = assemblies.length; i < il; ++i) {
const { pdbx_struct_assembly, rcsb_struct_symmetry, rcsb_struct_symmetry_provenance } = assemblies[i]
if (!pdbx_struct_assembly || !rcsb_struct_symmetry ||!rcsb_struct_symmetry_provenance) continue
const { pdbx_struct_assembly, rcsb_struct_symmetry } = assemblies[i]
if (!pdbx_struct_assembly || !rcsb_struct_symmetry) continue
const assembly_id = pdbx_struct_assembly.id
for (let j = 0, jl = rcsb_struct_symmetry.length; j < jl; ++j) {
const rss = rcsb_struct_symmetry[j]! // TODO upstream, array members should not be nullable
featureRows.push({
id,
assembly_id,
provenance: rcsb_struct_symmetry_provenance,
type: rss.type,
type: rss.type as SymmetryType,
stoichiometry: rss.stoichiometry as string[], // TODO upstream, array members should not be nullable
kind: rss.kind,
kind: rss.kind as SymmetryKind,
symbol: rss.symbol,
oligomeric_state: rss.oligomeric_state
})
......@@ -181,6 +180,9 @@ export function AssemblySymmetry(db: AssemblySymmetry.Database): AssemblySymmetr
}
}
type SymmetryKind = 'GLOBAL' | 'LOCAL' | 'PSEUDO'
type SymmetryType = 'ASYMMETRIC' | 'CYCLIC' | 'DIHEDRAL' | 'HELICAL' | 'ICOSAHEDRAL' | 'OCTAHEDRAL' | 'TETRAHEDRAL'
const Client = new GraphQLClient(AssemblySymmetry.GraphQLEndpointURL, (url: string, type: 'string' | 'binary', body?: string) => ajaxGet({ url, type, body }) )
export namespace AssemblySymmetry {
......@@ -200,10 +202,8 @@ export namespace AssemblySymmetry {
* The value 'deposited' refers to the coordinates as given in the file.
* */
assembly_id: str,
/** Name and version of software used to calculate assembly symmetry */
provenance: str,
/** Type of protein symmetry */
kind: Aliased<'GLOBAL' | 'LOCAL' | 'PSEUDO'>(str),
kind: Aliased<SymmetryKind>(str),
/** Quantitative description of every individual subunit in a given protein */
stoichiometry: List(',', x => x),
/**
......@@ -212,7 +212,7 @@ export namespace AssemblySymmetry {
*/
symbol: str,
/** Point group or helical symmetry */
type: Aliased<'ASYMMETRIC' | 'CYCLIC' | 'DIHEDRAL' | 'HELICAL' | 'ICOSAHEDRAL' | 'OCTAHEDRAL' | 'TETRAHEDRAL'>(str),
type: Aliased<SymmetryType>(str),
/**
* Oligomeric state refers to a composition of subunits in quaternary structure.
* Quaternary structure may be composed either exclusively of several copies of identical
......
src/mol-model-props/rcsb/graphql/symmetry.gql.ts
+ 0
− 1
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......@@ -26,6 +26,5 @@ gql`query AssemblySymmetry($pdbId: String!) {
symbol
type
}
rcsb_struct_symmetry_provenance
}
}`
\ No newline at end of file
src/mol-model-props/rcsb/graphql/types.ts
+ 30
− 1218
View file @ 7c33f4d0
/* tslint:disable */
/** Generated in 2018-10-31T12:19:29-07:00 */
// ====================================================
// START: Typescript template
// ====================================================
// ====================================================
// Scalars
// ====================================================
// Generated in 2019-01-30T16:38:09-08:00
export type Maybe<T> = T | null;
/** Built-in scalar representing an instant in time */
export type Date = any;
// ====================================================
// Enums
// ====================================================
export enum ChemCompPdbxIdealCoordinatesMissingFlag {
N = "N",
Y = "Y"
}
export enum ChemCompPdbxModelCoordinatesMissingFlag {
N = "N",
Y = "Y"
}
export enum ChemCompPdbxProcessingSite {
EBI = "EBI",
PDBE = "PDBE",
PDBJ = "PDBJ",
RCSB = "RCSB"
}
export enum ChemCompPdbxReleaseStatus {
DEL = "DEL",
HOLD = "HOLD",
HPUB = "HPUB",
OBS = "OBS",
REF_ONLY = "REF_ONLY",
REL = "REL"
}
export enum ChemCompType {
DNA_LINKING = "DNA_LINKING",
DNA_OH_3_PRIME_TERMINUS = "DNA_OH_3_PRIME_TERMINUS",
DNA_OH_5_PRIME_TERMINUS = "DNA_OH_5_PRIME_TERMINUS",
D_BETA_PEPTIDE_C_GAMMA_LINKING = "D_BETA_PEPTIDE_C_GAMMA_LINKING",
D_GAMMA_PEPTIDE_C_DELTA_LINKING = "D_GAMMA_PEPTIDE_C_DELTA_LINKING",
D_PEPTIDE_COOH_CARBOXY_TERMINUS = "D_PEPTIDE_COOH_CARBOXY_TERMINUS",
D_PEPTIDE_LINKING = "D_PEPTIDE_LINKING",
D_PEPTIDE_NH_3_AMINO_TERMINUS = "D_PEPTIDE_NH_3_AMINO_TERMINUS",
D_SACCHARIDE = "D_SACCHARIDE",
D_SACCHARIDE_1_4_AND_1_4_LINKING = "D_SACCHARIDE_1_4_AND_1_4_LINKING",
D_SACCHARIDE_1_4_AND_1_6_LINKING = "D_SACCHARIDE_1_4_AND_1_6_LINKING",
L_BETA_PEPTIDE_C_GAMMA_LINKING = "L_BETA_PEPTIDE_C_GAMMA_LINKING",
L_DNA_LINKING = "L_DNA_LINKING",
L_GAMMA_PEPTIDE_C_DELTA_LINKING = "L_GAMMA_PEPTIDE_C_DELTA_LINKING",
L_PEPTIDE_COOH_CARBOXY_TERMINUS = "L_PEPTIDE_COOH_CARBOXY_TERMINUS",
L_PEPTIDE_LINKING = "L_PEPTIDE_LINKING",
L_PEPTIDE_NH_3_AMINO_TERMINUS = "L_PEPTIDE_NH_3_AMINO_TERMINUS",
L_RNA_LINKING = "L_RNA_LINKING",
L_SACCHARIDE = "L_SACCHARIDE",
L_SACCHARIDE_1_4_AND_1_4_LINKING = "L_SACCHARIDE_1_4_AND_1_4_LINKING",
L_SACCHARIDE_1_4_AND_1_6_LINKING = "L_SACCHARIDE_1_4_AND_1_6_LINKING",
NON_POLYMER = "NON_POLYMER",
OTHER = "OTHER",
PEPTIDE_LIKE = "PEPTIDE_LIKE",
PEPTIDE_LINKING = "PEPTIDE_LINKING",
RNA_LINKING = "RNA_LINKING",
RNA_OH_3_PRIME_TERMINUS = "RNA_OH_3_PRIME_TERMINUS",
RNA_OH_5_PRIME_TERMINUS = "RNA_OH_5_PRIME_TERMINUS",
SACCHARIDE = "SACCHARIDE"
}
export enum ChemCompAtomPdbxAromaticFlag {
N = "N",
Y = "Y"
}
export enum ChemCompAtomPdbxLeavingAtomFlag {
N = "N",
Y = "Y"
}
export enum ChemCompAtomPdbxPolymerType {
NON_POLYMER = "NON_POLYMER",
POLYMER = "POLYMER"
}
export enum ChemCompAtomPdbxStereoConfig {
N = "N",
R = "R",
S = "S"
}
export enum ChemCompBondPdbxAromaticFlag {
N = "N",
Y = "Y"
}
export enum ChemCompBondPdbxStereoConfig {
E = "E",
N = "N",
Z = "Z"
}
export enum ChemCompBondValueOrder {
AROM = "AROM",
DELO = "DELO",
DOUB = "DOUB",
PI = "PI",
POLY = "POLY",
QUAD = "QUAD",
SING = "SING",
TRIP = "TRIP"
}
export enum PdbxChemCompAuditActionType {
CREATE_COMPONENT = "CREATE_COMPONENT",
INITIAL_RELEASE = "INITIAL_RELEASE",
MODIFY_AROMATIC_FLAG = "MODIFY_AROMATIC_FLAG",
MODIFY_ATOM_ID = "MODIFY_ATOM_ID",
MODIFY_CHARGE = "MODIFY_CHARGE",
MODIFY_COMPONENT_ATOM_ID = "MODIFY_COMPONENT_ATOM_ID",
MODIFY_COMPONENT_COMP_ID = "MODIFY_COMPONENT_COMP_ID",
MODIFY_COORDINATES = "MODIFY_COORDINATES",
MODIFY_DESCRIPTOR = "MODIFY_DESCRIPTOR",
MODIFY_FORMAL_CHARGE = "MODIFY_FORMAL_CHARGE",
MODIFY_FORMULA = "MODIFY_FORMULA",
MODIFY_IDENTIFIER = "MODIFY_IDENTIFIER",
MODIFY_INTERNAL_TYPE = "MODIFY_INTERNAL_TYPE",
MODIFY_LEAVING_ATOM_FLAG = "MODIFY_LEAVING_ATOM_FLAG",
MODIFY_LINKING_TYPE = "MODIFY_LINKING_TYPE",
MODIFY_MODEL_COORDINATES_CODE = "MODIFY_MODEL_COORDINATES_CODE",
MODIFY_NAME = "MODIFY_NAME",
MODIFY_ONE_LETTER_CODE = "MODIFY_ONE_LETTER_CODE",
MODIFY_PARENT_RESIDUE = "MODIFY_PARENT_RESIDUE",
MODIFY_PROCESSING_SITE = "MODIFY_PROCESSING_SITE",
MODIFY_SUBCOMPONENT_LIST = "MODIFY_SUBCOMPONENT_LIST",
MODIFY_SYNONYMS = "MODIFY_SYNONYMS",
MODIFY_VALUE_ORDER = "MODIFY_VALUE_ORDER",
OBSOLETE_COMPONENT = "OBSOLETE_COMPONENT",
OTHER_MODIFICATION = "OTHER_MODIFICATION"
}
export enum PdbxChemCompDescriptorType {
IN_CH_I = "IN_CH_I",
IN_CH_I_CHARGE = "IN_CH_I_CHARGE",
IN_CH_I_FIXEDH = "IN_CH_I_FIXEDH",
IN_CH_I_ISOTOPE = "IN_CH_I_ISOTOPE",
IN_CH_I_KEY = "IN_CH_I_KEY",
IN_CH_I_MAIN = "IN_CH_I_MAIN",
IN_CH_I_MAIN_CONNECT = "IN_CH_I_MAIN_CONNECT",
IN_CH_I_MAIN_FORMULA = "IN_CH_I_MAIN_FORMULA",
IN_CH_I_MAIN_HATOM = "IN_CH_I_MAIN_HATOM",
IN_CH_I_RECONNECT = "IN_CH_I_RECONNECT",
IN_CH_I_STEREO = "IN_CH_I_STEREO",
SMILES = "SMILES",
SMILES_CANNONICAL = "SMILES_CANNONICAL",
SMILES_CANONICAL = "SMILES_CANONICAL"
}
export enum PdbxChemCompIdentifierType {
CAS_REGISTRY_NUMBER = "CAS_REGISTRY_NUMBER",
COMMON_NAME = "COMMON_NAME",
CONDENSED_IUPAC_CARB_NAME = "CONDENSED_IUPAC_CARB_NAME",
IUPAC_CARB_NAME = "IUPAC_CARB_NAME",
MDL_IDENTIFIER = "MDL_IDENTIFIER",
PUBCHEM_IDENTIFIER = "PUBCHEM_IDENTIFIER",
SYNONYM = "SYNONYM",
SYSTEMATIC_NAME = "SYSTEMATIC_NAME"
}
export enum PdbxStructAssemblyRcsbCandidateAssembly {
N = "N",
Y = "Y"
}
export enum PdbxStructAssemblyRcsbDetails {
AUTHOR_AND_SOFTWARE_DEFINED_ASSEMBLY = "AUTHOR_AND_SOFTWARE_DEFINED_ASSEMBLY",
AUTHOR_DEFINED_ASSEMBLY = "AUTHOR_DEFINED_ASSEMBLY",
SOFTWARE_DEFINED_ASSEMBLY = "SOFTWARE_DEFINED_ASSEMBLY"
}
export enum PdbxStructAssemblyAuthEvidenceExperimentalSupport {
ASSAY_FOR_OLIGOMERIZATION = "ASSAY_FOR_OLIGOMERIZATION",
CROSS_LINKING = "CROSS_LINKING",
EQUILIBRIUM_CENTRIFUGATION = "EQUILIBRIUM_CENTRIFUGATION",
FLUORESCENCE_RESONANCE_ENERGY_TRANSFER = "FLUORESCENCE_RESONANCE_ENERGY_TRANSFER",
GEL_FILTRATION = "GEL_FILTRATION",
HOMOLOGY = "HOMOLOGY",
IMMUNOPRECIPITATION = "IMMUNOPRECIPITATION",
ISOTHERMAL_TITRATION_CALORIMETRY = "ISOTHERMAL_TITRATION_CALORIMETRY",
LIGHT_SCATTERING = "LIGHT_SCATTERING",
MASS_SPECTROMETRY = "MASS_SPECTROMETRY",
MICROSCOPY = "MICROSCOPY",
NATIVE_GEL_ELECTROPHORESIS = "NATIVE_GEL_ELECTROPHORESIS",
NONE = "NONE",
SAXS = "SAXS",
SCANNING_TRANSMISSION_ELECTRON_MICROSCOPY = "SCANNING_TRANSMISSION_ELECTRON_MICROSCOPY",
SURFACE_PLASMON_RESONANCE = "SURFACE_PLASMON_RESONANCE"
}
export enum PdbxStructAssemblyPropType {
ABSA_A_2 = "ABSA_A_2",
MORE = "MORE",
SSA_A_2 = "SSA_A_2"
}
export enum PdbxStructOperListType {
BUILD_2_D_CRYSTAL_ASYMMETRIC_UNIT = "BUILD_2_D_CRYSTAL_ASYMMETRIC_UNIT",
BUILD_3_D_CRYSTAL_ASYMMETRIC_UNIT = "BUILD_3_D_CRYSTAL_ASYMMETRIC_UNIT",
BUILD_HELICAL_ASYMMETRIC_UNIT = "BUILD_HELICAL_ASYMMETRIC_UNIT",
BUILD_POINT_ASYMMETRIC_UNIT = "BUILD_POINT_ASYMMETRIC_UNIT",
CRYSTAL_SYMMETRY_OPERATION = "CRYSTAL_SYMMETRY_OPERATION",
HELICAL_SYMMETRY_OPERATION = "HELICAL_SYMMETRY_OPERATION",
IDENTITY_OPERATION = "IDENTITY_OPERATION",
POINT_SYMMETRY_OPERATION = "POINT_SYMMETRY_OPERATION",
TRANSFORM_TO_2_D_CRYSTAL_FRAME = "TRANSFORM_TO_2_D_CRYSTAL_FRAME",
TRANSFORM_TO_3_D_CRYSTAL_FRAME = "TRANSFORM_TO_3_D_CRYSTAL_FRAME",
TRANSFORM_TO_CRYSTAL_FRAME = "TRANSFORM_TO_CRYSTAL_FRAME",
TRANSFORM_TO_HELICAL_FRAME = "TRANSFORM_TO_HELICAL_FRAME",
TRANSFORM_TO_POINT_FRAME = "TRANSFORM_TO_POINT_FRAME",
_2_D_CRYSTAL_SYMMETRY_OPERATION = "_2_D_CRYSTAL_SYMMETRY_OPERATION",
_3_D_CRYSTAL_SYMMETRY_OPERATION = "_3_D_CRYSTAL_SYMMETRY_OPERATION"
}
export enum RcsbStructSymmetryKind {
GLOBAL = "GLOBAL",
LOCAL = "LOCAL",
PSEUDO = "PSEUDO"
}
export enum RcsbStructSymmetryType {
ASYMMETRIC = "ASYMMETRIC",
CYCLIC = "CYCLIC",
DIHEDRAL = "DIHEDRAL",
HELICAL = "HELICAL",
ICOSAHEDRAL = "ICOSAHEDRAL",
OCTAHEDRAL = "OCTAHEDRAL",
TETRAHEDRAL = "TETRAHEDRAL"
}
export enum CitationCoordinateLinkage {
N = "N",
NO = "NO",
Y = "Y",
YES = "YES"
}
export enum CitationUnpublishedFlag {
N = "N",
Y = "Y"
}
export enum DiffrnRadiationPdbxMonochromaticOrLaueMl {
L = "L",
M = "M"
}
export enum DiffrnRadiationPdbxScatteringType {
ELECTRON = "ELECTRON",
NEUTRON = "NEUTRON",
X_RAY = "X_RAY"
}
export enum Em2dCrystalEntitySpaceGroupNameHm {
C_1_2 = "C_1_2",
C_2_2_2 = "C_2_2_2",
P_1 = "P_1",
P_1_2 = "P_1_2",
P_1_21 = "P_1_21",
P_2 = "P_2",
P_2_21_21 = "P_2_21_21",
P_2_2_2 = "P_2_2_2",
P_2_2_21 = "P_2_2_21",
P_3 = "P_3",
P_3_1_2 = "P_3_1_2",
P_3_2_1 = "P_3_2_1",
P_4 = "P_4",
P_4_21_2 = "P_4_21_2",
P_4_2_2 = "P_4_2_2",
P_6 = "P_6",
P_6_2_2 = "P_6_2_2"
}
export enum Em3dFittingRefProtocol {
AB_INITIO_MODEL = "AB_INITIO_MODEL",
BACKBONE_TRACE = "BACKBONE_TRACE",
FLEXIBLE_FIT = "FLEXIBLE_FIT",
OTHER = "OTHER",
RIGID_BODY_FIT = "RIGID_BODY_FIT"
}
export enum Em3dFittingRefSpace {
REAL = "REAL",
RECIPROCAL = "RECIPROCAL"
}
export enum Em3dReconstructionRefinementType {
HALF_MAPS_REFINED_AGAINST_SAME_DATA = "HALF_MAPS_REFINED_AGAINST_SAME_DATA",
HALF_MAPS_REFINED_INDEPENDENTLY = "HALF_MAPS_REFINED_INDEPENDENTLY",
HALF_MAPS_REFINED_INDEPENDENTLY_WITH_FREQUENCY_RANGE_OMITTED = "HALF_MAPS_REFINED_INDEPENDENTLY_WITH_FREQUENCY_RANGE_OMITTED",
HALF_MAPS_REFINED_WITH_FREQUENCY_RANGE_OMITTED = "HALF_MAPS_REFINED_WITH_FREQUENCY_RANGE_OMITTED",
OTHER = "OTHER"
}
export enum Em3dReconstructionSymmetryType {
HELICAL = "HELICAL",
POINT = "POINT",
_2_D_CRYSTAL = "_2_D_CRYSTAL",
_3_D_CRYSTAL = "_3_D_CRYSTAL"
}
export enum EmEntityAssemblySource {
MULTIPLE_SOURCES = "MULTIPLE_SOURCES",
NATURAL = "NATURAL",
RECOMBINANT = "RECOMBINANT"
}
export enum EmExperimentAggregationState {
CELL = "CELL",
FILAMENT = "FILAMENT",
HELICAL_ARRAY = "HELICAL_ARRAY",
PARTICLE = "PARTICLE",
TISSUE = "TISSUE",
_2_D_ARRAY = "_2_D_ARRAY",
_3_D_ARRAY = "_3_D_ARRAY"
}
export enum EmExperimentReconstructionMethod {
CRYSTALLOGRAPHY = "CRYSTALLOGRAPHY",
HELICAL = "HELICAL",
SINGLE_PARTICLE = "SINGLE_PARTICLE",
SUBTOMOGRAM_AVERAGING = "SUBTOMOGRAM_AVERAGING",
TOMOGRAPHY = "TOMOGRAPHY"
}
export enum EmImageRecordingDetectorMode {
COUNTING = "COUNTING",
INTEGRATING = "INTEGRATING",
OTHER = "OTHER",
SUPER_RESOLUTION = "SUPER_RESOLUTION"
}
export enum EmImagingAlignmentProcedure {
BASIC = "BASIC",
COMA_FREE = "COMA_FREE",
NONE = "NONE",
OTHER = "OTHER",
ZEMLIN_TABLEAU = "ZEMLIN_TABLEAU"
}
export enum EmImagingCryogen {
HELIUM = "HELIUM",
NITROGEN = "NITROGEN"
}
export enum EmImagingIlluminationMode {
FLOOD_BEAM = "FLOOD_BEAM",
OTHER = "OTHER",
SPOT_SCAN = "SPOT_SCAN"
}
export enum EmImagingMicroscopeModel {
FEI_MORGAGNI = "FEI_MORGAGNI",
FEI_PHILIPS_CM_10 = "FEI_PHILIPS_CM_10",
FEI_PHILIPS_CM_12 = "FEI_PHILIPS_CM_12",
FEI_PHILIPS_CM_120_T = "FEI_PHILIPS_CM_120_T",
FEI_PHILIPS_CM_200_FEG = "FEI_PHILIPS_CM_200_FEG",
FEI_PHILIPS_CM_200_FEG_SOPHIE = "FEI_PHILIPS_CM_200_FEG_SOPHIE",
FEI_PHILIPS_CM_200_FEG_ST = "FEI_PHILIPS_CM_200_FEG_ST",
FEI_PHILIPS_CM_200_FEG_UT = "FEI_PHILIPS_CM_200_FEG_UT",
FEI_PHILIPS_CM_200_T = "FEI_PHILIPS_CM_200_T",
FEI_PHILIPS_CM_300_FEG_HE = "FEI_PHILIPS_CM_300_FEG_HE",
FEI_PHILIPS_CM_300_FEG_ST = "FEI_PHILIPS_CM_300_FEG_ST",
FEI_PHILIPS_CM_300_FEG_T = "FEI_PHILIPS_CM_300_FEG_T",
FEI_PHILIPS_EM_400 = "FEI_PHILIPS_EM_400",
FEI_PHILIPS_EM_420 = "FEI_PHILIPS_EM_420",
FEI_POLARA_300 = "FEI_POLARA_300",
FEI_TALOS_ARCTICA = "FEI_TALOS_ARCTICA",
FEI_TECNAI_10 = "FEI_TECNAI_10",
FEI_TECNAI_12 = "FEI_TECNAI_12",
FEI_TECNAI_20 = "FEI_TECNAI_20",
FEI_TECNAI_ARCTICA = "FEI_TECNAI_ARCTICA",
FEI_TECNAI_F_20 = "FEI_TECNAI_F_20",
FEI_TECNAI_F_30 = "FEI_TECNAI_F_30",
FEI_TECNAI_SPHERA = "FEI_TECNAI_SPHERA",
FEI_TECNAI_SPIRIT = "FEI_TECNAI_SPIRIT",
FEI_TITAN = "FEI_TITAN",
FEI_TITAN_KRIOS = "FEI_TITAN_KRIOS",
HITACHI_EF_2000 = "HITACHI_EF_2000",
HITACHI_EF_3000 = "HITACHI_EF_3000",
HITACHI_HF_2000 = "HITACHI_HF_2000",
HITACHI_HF_3000 = "HITACHI_HF_3000",
HITACHI_H_7600 = "HITACHI_H_7600",
HITACHI_H_9500_SD = "HITACHI_H_9500_SD",
JEOL_100_B = "JEOL_100_B",
JEOL_100_CX = "JEOL_100_CX",
JEOL_1010 = "JEOL_1010",
JEOL_1200 = "JEOL_1200",
JEOL_1200_EX = "JEOL_1200_EX",
JEOL_1200_EXII = "JEOL_1200_EXII",
JEOL_1230 = "JEOL_1230",
JEOL_1400 = "JEOL_1400",
JEOL_2000_EX = "JEOL_2000_EX",
JEOL_2000_EXII = "JEOL_2000_EXII",
JEOL_2010 = "JEOL_2010",
JEOL_2010_F = "JEOL_2010_F",
JEOL_2010_HC = "JEOL_2010_HC",
JEOL_2010_HT = "JEOL_2010_HT",
JEOL_2010_UHR = "JEOL_2010_UHR",
JEOL_2011 = "JEOL_2011",
JEOL_2100 = "JEOL_2100",
JEOL_2100_F = "JEOL_2100_F",
JEOL_2200_FS = "JEOL_2200_FS",
JEOL_2200_FSC = "JEOL_2200_FSC",
JEOL_3000_SFF = "JEOL_3000_SFF",
JEOL_3100_FEF = "JEOL_3100_FEF",
JEOL_3100_FFC = "JEOL_3100_FFC",
JEOL_3200_FS = "JEOL_3200_FS",
JEOL_3200_FSC = "JEOL_3200_FSC",
JEOL_4000 = "JEOL_4000",
JEOL_4000_EX = "JEOL_4000_EX",
JEOL_CRYO_ARM_200 = "JEOL_CRYO_ARM_200",
JEOL_CRYO_ARM_300 = "JEOL_CRYO_ARM_300",
JEOL_KYOTO_3000_SFF = "JEOL_KYOTO_3000_SFF",
SIEMENS_SULEIKA = "SIEMENS_SULEIKA",
ZEISS_LEO_912 = "ZEISS_LEO_912",
ZEISS_LIBRA_120_PLUS = "ZEISS_LIBRA_120_PLUS"
}
export enum EmImagingMode {
BRIGHT_FIELD = "BRIGHT_FIELD",
DARK_FIELD = "DARK_FIELD",
DIFFRACTION = "DIFFRACTION",
OTHER = "OTHER"
}
export enum EmImagingSpecimenHolderModel {
FEI_TITAN_KRIOS_AUTOGRID_HOLDER = "FEI_TITAN_KRIOS_AUTOGRID_HOLDER",
FISCHIONE_INSTRUMENTS_DUAL_AXIS_TOMOGRAPHY_HOLDER = "FISCHIONE_INSTRUMENTS_DUAL_AXIS_TOMOGRAPHY_HOLDER",
GATAN_626_SINGLE_TILT_LIQUID_NITROGEN_CRYO_TRANSFER_HOLDER = "GATAN_626_SINGLE_TILT_LIQUID_NITROGEN_CRYO_TRANSFER_HOLDER",
GATAN_910_MULTI_SPECIMEN_SINGLE_TILT_CRYO_TRANSFER_HOLDER = "GATAN_910_MULTI_SPECIMEN_SINGLE_TILT_CRYO_TRANSFER_HOLDER",
GATAN_914_HIGH_TILT_LIQUID_NITROGEN_CRYO_TRANSFER_TOMOGRAPHY_HOLDER = "GATAN_914_HIGH_TILT_LIQUID_NITROGEN_CRYO_TRANSFER_TOMOGRAPHY_HOLDER",
GATAN_915_DOUBLE_TILT_LIQUID_NITROGEN_CRYO_TRANSFER_HOLDER = "GATAN_915_DOUBLE_TILT_LIQUID_NITROGEN_CRYO_TRANSFER_HOLDER",
GATAN_CHDT_3504_DOUBLE_TILT_HIGH_RESOLUTION_NITROGEN_COOLING_HOLDER = "GATAN_CHDT_3504_DOUBLE_TILT_HIGH_RESOLUTION_NITROGEN_COOLING_HOLDER",
GATAN_CT_3500_SINGLE_TILT_LIQUID_NITROGEN_CRYO_TRANSFER_HOLDER = "GATAN_CT_3500_SINGLE_TILT_LIQUID_NITROGEN_CRYO_TRANSFER_HOLDER",
GATAN_CT_3500_TR_SINGLE_TILT_ROTATION_LIQUID_NITROGEN_CRYO_TRANSFER_HOLDER = "GATAN_CT_3500_TR_SINGLE_TILT_ROTATION_LIQUID_NITROGEN_CRYO_TRANSFER_HOLDER",
GATAN_HCHDT_3010_DOUBLE_TILT_HIGH_RESOLUTION_HELIUM_COOLING_HOLDER = "GATAN_HCHDT_3010_DOUBLE_TILT_HIGH_RESOLUTION_HELIUM_COOLING_HOLDER",
GATAN_HCHST_3008_SINGLE_TILT_HIGH_RESOLUTION_HELIUM_COOLING_HOLDER = "GATAN_HCHST_3008_SINGLE_TILT_HIGH_RESOLUTION_HELIUM_COOLING_HOLDER",
GATAN_HC_3500_SINGLE_TILT_HEATING_NITROGEN_COOLING_HOLDER = "GATAN_HC_3500_SINGLE_TILT_HEATING_NITROGEN_COOLING_HOLDER",
GATAN_HELIUM = "GATAN_HELIUM",
GATAN_LIQUID_NITROGEN = "GATAN_LIQUID_NITROGEN",
GATAN_UHRST_3500_SINGLE_TILT_ULTRA_HIGH_RESOLUTION_NITROGEN_COOLING_HOLDER = "GATAN_UHRST_3500_SINGLE_TILT_ULTRA_HIGH_RESOLUTION_NITROGEN_COOLING_HOLDER",
GATAN_ULTDT_ULTRA_LOW_TEMPERATURE_DOUBLE_TILT_HELIUM_COOLING_HOLDER = "GATAN_ULTDT_ULTRA_LOW_TEMPERATURE_DOUBLE_TILT_HELIUM_COOLING_HOLDER",
GATAN_ULTST_ULTRA_LOW_TEMPERATURE_SINGLE_TILT_HELIUM_COOLING_HOLDER = "GATAN_ULTST_ULTRA_LOW_TEMPERATURE_SINGLE_TILT_HELIUM_COOLING_HOLDER",
HOME_BUILD = "HOME_BUILD",
JEOL = "JEOL",
JEOL_3200_FSC_CRYOHOLDER = "JEOL_3200_FSC_CRYOHOLDER",
JEOL_CRYOSPECPORTER = "JEOL_CRYOSPECPORTER",
OTHER = "OTHER",
PHILIPS_ROTATION_HOLDER = "PHILIPS_ROTATION_HOLDER",
SIDE_ENTRY_EUCENTRIC = "SIDE_ENTRY_EUCENTRIC"
}
export enum EmSoftwareCategory {
CLASSIFICATION = "CLASSIFICATION",
CRYSTALLOGRAPHY_MERGING = "CRYSTALLOGRAPHY_MERGING",
CTF_CORRECTION = "CTF_CORRECTION",
DIFFRACTION_INDEXING = "DIFFRACTION_INDEXING",
FINAL_EULER_ASSIGNMENT = "FINAL_EULER_ASSIGNMENT",
IMAGE_ACQUISITION = "IMAGE_ACQUISITION",
INITIAL_EULER_ASSIGNMENT = "INITIAL_EULER_ASSIGNMENT",
LATTICE_DISTORTION_CORRECTION = "LATTICE_DISTORTION_CORRECTION",
LAYERLINE_INDEXING = "LAYERLINE_INDEXING",
MASKING = "MASKING",
MODEL_FITTING = "MODEL_FITTING",
MODEL_REFINEMENT = "MODEL_REFINEMENT",
MOLECULAR_REPLACEMENT = "MOLECULAR_REPLACEMENT",
OTHER = "OTHER",
PARTICLE_SELECTION = "PARTICLE_SELECTION",
RECONSTRUCTION = "RECONSTRUCTION",
SERIES_ALIGNMENT = "SERIES_ALIGNMENT",
SYMMETRY_DETERMINATION = "SYMMETRY_DETERMINATION",
VOLUME_SELECTION = "VOLUME_SELECTION"
}
export enum EmSpecimenEmbeddingApplied {
NO = "NO",
YES = "YES"
}
export enum EmSpecimenShadowingApplied {
NO = "NO",
YES = "YES"
}
export enum EmSpecimenStainingApplied {
NO = "NO",
YES = "YES"
}
export enum EmSpecimenVitrificationApplied {
NO = "NO",
YES = "YES"
}
export enum EmStainingType {
NEGATIVE = "NEGATIVE",
NONE = "NONE",
POSITIVE = "POSITIVE"
}
export enum EmVitrificationCryogenName {
ETHANE = "ETHANE",
ETHANE_PROPANE = "ETHANE_PROPANE",
FREON_12 = "FREON_12",
FREON_22 = "FREON_22",
HELIUM = "HELIUM",
METHANE = "METHANE",
NITROGEN = "NITROGEN",
OTHER = "OTHER",
PROPANE = "PROPANE"
}
export enum EmVitrificationInstrument {
EMS_002_RAPID_IMMERSION_FREEZER = "EMS_002_RAPID_IMMERSION_FREEZER",
FEI_VITROBOT_MARK_I = "FEI_VITROBOT_MARK_I",
FEI_VITROBOT_MARK_II = "FEI_VITROBOT_MARK_II",
FEI_VITROBOT_MARK_III = "FEI_VITROBOT_MARK_III",
FEI_VITROBOT_MARK_IV = "FEI_VITROBOT_MARK_IV",
GATAN_CRYOPLUNGE_3 = "GATAN_CRYOPLUNGE_3",
HOMEMADE_PLUNGER = "HOMEMADE_PLUNGER",
LEICA_EM_CPC = "LEICA_EM_CPC",
LEICA_EM_GP = "LEICA_EM_GP",
LEICA_KF_80 = "LEICA_KF_80",
LEICA_PLUNGER = "LEICA_PLUNGER",
REICHERT_JUNG_PLUNGER = "REICHERT_JUNG_PLUNGER",
SPOTITON = "SPOTITON",
ZEISS_PLUNGE_FREEZER_CRYOBOX = "ZEISS_PLUNGE_FREEZER_CRYOBOX"
}
export enum EntityRcsbMultipleSourceFlag {
N = "N",
Y = "Y"
}
export enum EntitySrcMethod {
MAN = "MAN",
NAT = "NAT",
SYN = "SYN"
}
export enum EntityType {
BRANCHED = "BRANCHED",
MACROLIDE = "MACROLIDE",
NON_POLYMER = "NON_POLYMER",
POLYMER = "POLYMER",
WATER = "WATER"
}
export enum EntityPolyNstdLinkage {
N = "N",
NO = "NO",
Y = "Y",
YES = "YES"
}
export enum EntityPolyNstdMonomer {
N = "N",
NO = "NO",
Y = "Y",
YES = "YES"
}
export enum EntityPolyType {
CYCLIC_PSEUDO_PEPTIDE = "CYCLIC_PSEUDO_PEPTIDE",
OTHER = "OTHER",
PEPTIDE_NUCLEIC_ACID = "PEPTIDE_NUCLEIC_ACID",
POLYDEOXYRIBONUCLEOTIDE = "POLYDEOXYRIBONUCLEOTIDE",
POLYDEOXYRIBONUCLEOTIDE_POLYRIBONUCLEOTIDE_HYBRID = "POLYDEOXYRIBONUCLEOTIDE_POLYRIBONUCLEOTIDE_HYBRID",
POLYPEPTIDE_D = "POLYPEPTIDE_D",
POLYPEPTIDE_L = "POLYPEPTIDE_L",
POLYRIBONUCLEOTIDE = "POLYRIBONUCLEOTIDE",
POLYSACCHARIDE_D = "POLYSACCHARIDE_D",
POLYSACCHARIDE_L = "POLYSACCHARIDE_L"
}
export enum EntitySrcGenPdbxAltSourceFlag {
MODEL = "MODEL",
SAMPLE = "SAMPLE"
}
export enum EntitySrcGenPdbxSeqType {
BIOLOGICAL_SEQUENCE = "BIOLOGICAL_SEQUENCE",
C_TERMINAL_TAG = "C_TERMINAL_TAG",
LINKER = "LINKER",
N_TERMINAL_TAG = "N_TERMINAL_TAG"
}
export enum EntitySrcNatPdbxAltSourceFlag {
MODEL = "MODEL",
SAMPLE = "SAMPLE"
}
export enum PdbxEntitySrcSynPdbxAltSourceFlag {
MODEL = "MODEL",
SAMPLE = "SAMPLE"
}
export enum RcsbEntityHostOrganismProvenanceCode {
PDB_PRIMARY_DATA = "PDB_PRIMARY_DATA"
}
export enum RcsbEntitySourceOrganismProvenanceCode {
PDB_PRIMARY_DATA = "PDB_PRIMARY_DATA"
}
export enum RcsbEntitySourceOrganismSourceType {
GENETICALLY_ENGINEERED = "GENETICALLY_ENGINEERED",
NATURAL = "NATURAL",
SYNTHETIC = "SYNTHETIC"
}
export enum RcsbMembraneProvenanceSource {
HOMOLOGY = "HOMOLOGY",
MPSTRUCT = "MPSTRUCT"
}
export enum StructAsymPdbxBlankPdbChainidFlag {
N = "N",
Y = "Y"
}
export enum FeatureType {
ACTIVE_SITE = "ACTIVE_SITE",
BINDING_SITE = "BINDING_SITE",
CALCIUM_BINDING_REGION = "CALCIUM_BINDING_REGION",
CHAIN = "CHAIN",
COILED_COIL_REGION = "COILED_COIL_REGION",
COMPOSITIONALLY_BIASED_REGION = "COMPOSITIONALLY_BIASED_REGION",
CROSS_LINK = "CROSS_LINK",
DISULFIDE_BOND = "DISULFIDE_BOND",
DNA_BINDING_REGION = "DNA_BINDING_REGION",
DOMAIN = "DOMAIN",
GLYCOSYLATION_SITE = "GLYCOSYLATION_SITE",
HELIX = "HELIX",
INITIATOR_METHIONINE = "INITIATOR_METHIONINE",
INTRAMEMBRANE_REGION = "INTRAMEMBRANE_REGION",
LIPID_MOIETY_BINDING_REGION = "LIPID_MOIETY_BINDING_REGION",
METAL_ION_BINDING_SITE = "METAL_ION_BINDING_SITE",
MODIFIED_RESIDUE = "MODIFIED_RESIDUE",
MUTAGENESIS_SITE = "MUTAGENESIS_SITE",
NON_CONSECUTIVE_RESIDUES = "NON_CONSECUTIVE_RESIDUES",
NON_STANDARD_AMINO_ACID = "NON_STANDARD_AMINO_ACID",
NON_TERMINAL_RESIDUE = "NON_TERMINAL_RESIDUE",
NUCLEOTIDE_PHOSPHATE_BINDING_REGION = "NUCLEOTIDE_PHOSPHATE_BINDING_REGION",
PEPTIDE = "PEPTIDE",
PROPEPTIDE = "PROPEPTIDE",
REGION_OF_INTEREST = "REGION_OF_INTEREST",
REPEAT = "REPEAT",
SEQUENCE_CONFLICT = "SEQUENCE_CONFLICT",
SEQUENCE_VARIANT = "SEQUENCE_VARIANT",
SHORT_SEQUENCE_MOTIF = "SHORT_SEQUENCE_MOTIF",
SIGNAL_PEPTIDE = "SIGNAL_PEPTIDE",
SITE = "SITE",
SPLICE_VARIANT = "SPLICE_VARIANT",
STRAND = "STRAND",
TOPOLOGICAL_DOMAIN = "TOPOLOGICAL_DOMAIN",
TRANSIT_PEPTIDE = "TRANSIT_PEPTIDE",
TRANSMEMBRANE_REGION = "TRANSMEMBRANE_REGION",
TURN = "TURN",
UNSURE_RESIDUE = "UNSURE_RESIDUE",
ZINC_FINGER_REGION = "ZINC_FINGER_REGION"
}
export enum GeneNameType {
ORDERED_LOCUS = "ORDERED_LOCUS",
ORF = "ORF",
PRIMARY = "PRIMARY",
SYNONYM = "SYNONYM"
}
export enum OrganismNameType {
ABBREVIATION = "ABBREVIATION",
COMMON = "COMMON",
FULL = "FULL",
SCIENTIFIC = "SCIENTIFIC",
SYNONYM = "SYNONYM"
}
export enum OrganismHostNameType {
ABBREVIATION = "ABBREVIATION",
COMMON = "COMMON",
FULL = "FULL",
SCIENTIFIC = "SCIENTIFIC",
SYNONYM = "SYNONYM"
}
export enum ExptlMethod {
ELECTRON_CRYSTALLOGRAPHY = "ELECTRON_CRYSTALLOGRAPHY",
ELECTRON_MICROSCOPY = "ELECTRON_MICROSCOPY",
EPR = "EPR",
FIBER_DIFFRACTION = "FIBER_DIFFRACTION",
FLUORESCENCE_TRANSFER = "FLUORESCENCE_TRANSFER",
INFRARED_SPECTROSCOPY = "INFRARED_SPECTROSCOPY",
NEUTRON_DIFFRACTION = "NEUTRON_DIFFRACTION",
POWDER_DIFFRACTION = "POWDER_DIFFRACTION",
SOLID_STATE_NMR = "SOLID_STATE_NMR",
SOLUTION_NMR = "SOLUTION_NMR",
SOLUTION_SCATTERING = "SOLUTION_SCATTERING",
THEORETICAL_MODEL = "THEORETICAL_MODEL",
X_RAY_DIFFRACTION = "X_RAY_DIFFRACTION"
}
export enum PdbxSgProjectFullNameOfCenter {
ACCELERATED_TECHNOLOGIES_CENTER_FOR_GENE_TO_3_D_STRUCTURE = "ACCELERATED_TECHNOLOGIES_CENTER_FOR_GENE_TO_3_D_STRUCTURE",
ASSEMBLY_DYNAMICS_AND_EVOLUTION_OF_CELL_CELL_AND_CELL_MATRIX_ADHESIONS = "ASSEMBLY_DYNAMICS_AND_EVOLUTION_OF_CELL_CELL_AND_CELL_MATRIX_ADHESIONS",
ATOMS_TO_ANIMALS_THE_IMMUNE_FUNCTION_NETWORK = "ATOMS_TO_ANIMALS_THE_IMMUNE_FUNCTION_NETWORK",
BACTERIAL_TARGETS_AT_IGS_CNRS_FRANCE = "BACTERIAL_TARGETS_AT_IGS_CNRS_FRANCE",
BERKELEY_STRUCTURAL_GENOMICS_CENTER = "BERKELEY_STRUCTURAL_GENOMICS_CENTER",
CENTER_FOR_EUKARYOTIC_STRUCTURAL_GENOMICS = "CENTER_FOR_EUKARYOTIC_STRUCTURAL_GENOMICS",
CENTER_FOR_HIGH_THROUGHPUT_STRUCTURAL_BIOLOGY = "CENTER_FOR_HIGH_THROUGHPUT_STRUCTURAL_BIOLOGY",
CENTER_FOR_MEMBRANE_PROTEINS_OF_INFECTIOUS_DISEASES = "CENTER_FOR_MEMBRANE_PROTEINS_OF_INFECTIOUS_DISEASES",
CENTER_FOR_STRUCTURAL_GENOMICS_OF_INFECTIOUS_DISEASES = "CENTER_FOR_STRUCTURAL_GENOMICS_OF_INFECTIOUS_DISEASES",
CENTER_FOR_STRUCTURES_OF_MEMBRANE_PROTEINS = "CENTER_FOR_STRUCTURES_OF_MEMBRANE_PROTEINS",
CENTER_FOR_THE_X_RAY_STRUCTURE_DETERMINATION_OF_HUMAN_TRANSPORTERS = "CENTER_FOR_THE_X_RAY_STRUCTURE_DETERMINATION_OF_HUMAN_TRANSPORTERS",
CHAPERONE_ENABLED_STUDIES_OF_EPIGENETIC_REGULATION_ENZYMES = "CHAPERONE_ENABLED_STUDIES_OF_EPIGENETIC_REGULATION_ENZYMES",
ENZYME_DISCOVERY_FOR_NATURAL_PRODUCT_BIOSYNTHESIS = "ENZYME_DISCOVERY_FOR_NATURAL_PRODUCT_BIOSYNTHESIS",
GPCR_NETWORK = "GPCR_NETWORK",
INTEGRATED_CENTER_FOR_STRUCTURE_AND_FUNCTION_INNOVATION = "INTEGRATED_CENTER_FOR_STRUCTURE_AND_FUNCTION_INNOVATION",
ISRAEL_STRUCTURAL_PROTEOMICS_CENTER = "ISRAEL_STRUCTURAL_PROTEOMICS_CENTER",
JOINT_CENTER_FOR_STRUCTURAL_GENOMICS = "JOINT_CENTER_FOR_STRUCTURAL_GENOMICS",
MARSEILLES_STRUCTURAL_GENOMICS_PROGRAM_AFMB = "MARSEILLES_STRUCTURAL_GENOMICS_PROGRAM_AFMB",
MEDICAL_STRUCTURAL_GENOMICS_OF_PATHOGENIC_PROTOZOA = "MEDICAL_STRUCTURAL_GENOMICS_OF_PATHOGENIC_PROTOZOA",
MEMBRANE_PROTEIN_STRUCTURAL_BIOLOGY_CONSORTIUM = "MEMBRANE_PROTEIN_STRUCTURAL_BIOLOGY_CONSORTIUM",
MEMBRANE_PROTEIN_STRUCTURES_BY_SOLUTION_NMR = "MEMBRANE_PROTEIN_STRUCTURES_BY_SOLUTION_NMR",
MIDWEST_CENTER_FOR_MACROMOLECULAR_RESEARCH = "MIDWEST_CENTER_FOR_MACROMOLECULAR_RESEARCH",
MIDWEST_CENTER_FOR_STRUCTURAL_GENOMICS = "MIDWEST_CENTER_FOR_STRUCTURAL_GENOMICS",
MITOCHONDRIAL_PROTEIN_PARTNERSHIP = "MITOCHONDRIAL_PROTEIN_PARTNERSHIP",
MONTREAL_KINGSTON_BACTERIAL_STRUCTURAL_GENOMICS_INITIATIVE = "MONTREAL_KINGSTON_BACTERIAL_STRUCTURAL_GENOMICS_INITIATIVE",
MYCOBACTERIUM_TUBERCULOSIS_STRUCTURAL_PROTEOMICS_PROJECT = "MYCOBACTERIUM_TUBERCULOSIS_STRUCTURAL_PROTEOMICS_PROJECT",
NEW_YORK_CONSORTIUM_ON_MEMBRANE_PROTEIN_STRUCTURE = "NEW_YORK_CONSORTIUM_ON_MEMBRANE_PROTEIN_STRUCTURE",
NEW_YORK_SGX_RESEARCH_CENTER_FOR_STRUCTURAL_GENOMICS = "NEW_YORK_SGX_RESEARCH_CENTER_FOR_STRUCTURAL_GENOMICS",
NEW_YORK_STRUCTURAL_GENOMICS_RESEARCH_CONSORTIUM = "NEW_YORK_STRUCTURAL_GENOMICS_RESEARCH_CONSORTIUM",
NEW_YORK_STRUCTURAL_GENOMI_X_RESEARCH_CONSORTIUM = "NEW_YORK_STRUCTURAL_GENOMI_X_RESEARCH_CONSORTIUM",
NORTHEAST_STRUCTURAL_GENOMICS_CONSORTIUM = "NORTHEAST_STRUCTURAL_GENOMICS_CONSORTIUM",
NUCLEOCYTOPLASMIC_TRANSPORT_A_TARGET_FOR_CELLULAR_CONTROL = "NUCLEOCYTOPLASMIC_TRANSPORT_A_TARGET_FOR_CELLULAR_CONTROL",
ONTARIO_CENTRE_FOR_STRUCTURAL_PROTEOMICS = "ONTARIO_CENTRE_FOR_STRUCTURAL_PROTEOMICS",
OXFORD_PROTEIN_PRODUCTION_FACILITY = "OXFORD_PROTEIN_PRODUCTION_FACILITY",
PARIS_SUD_YEAST_STRUCTURAL_GENOMICS = "PARIS_SUD_YEAST_STRUCTURAL_GENOMICS",
PARTNERSHIP_FOR_NUCLEAR_RECEPTOR_SIGNALING_CODE_BIOLOGY = "PARTNERSHIP_FOR_NUCLEAR_RECEPTOR_SIGNALING_CODE_BIOLOGY",
PARTNERSHIP_FOR_STEM_CELL_BIOLOGY = "PARTNERSHIP_FOR_STEM_CELL_BIOLOGY",
PARTNERSHIP_FOR_T_CELL_BIOLOGY = "PARTNERSHIP_FOR_T_CELL_BIOLOGY",
PROGRAM_FOR_THE_CHARACTERIZATION_OF_SECRETED_EFFECTOR_PROTEINS = "PROGRAM_FOR_THE_CHARACTERIZATION_OF_SECRETED_EFFECTOR_PROTEINS",
PROTEIN_STRUCTURE_FACTORY = "PROTEIN_STRUCTURE_FACTORY",
RIKEN_STRUCTURAL_GENOMICS_PROTEOMICS_INITIATIVE = "RIKEN_STRUCTURAL_GENOMICS_PROTEOMICS_INITIATIVE",
SCOTTISH_STRUCTURAL_PROTEOMICS_FACILITY = "SCOTTISH_STRUCTURAL_PROTEOMICS_FACILITY",
SEATTLE_STRUCTURAL_GENOMICS_CENTER_FOR_INFECTIOUS_DISEASE = "SEATTLE_STRUCTURAL_GENOMICS_CENTER_FOR_INFECTIOUS_DISEASE",
SOUTHEAST_COLLABORATORY_FOR_STRUCTURAL_GENOMICS = "SOUTHEAST_COLLABORATORY_FOR_STRUCTURAL_GENOMICS",
SOUTH_AFRICA_STRUCTURAL_TARGETS_ANNOTATION_DATABASE = "SOUTH_AFRICA_STRUCTURAL_TARGETS_ANNOTATION_DATABASE",
STRUCTURAL_GENOMICS_CONSORTIUM = "STRUCTURAL_GENOMICS_CONSORTIUM",
STRUCTURAL_GENOMICS_CONSORTIUM_FOR_RESEARCH_ON_GENE_EXPRESSION = "STRUCTURAL_GENOMICS_CONSORTIUM_FOR_RESEARCH_ON_GENE_EXPRESSION",
STRUCTURAL_GENOMICS_OF_PATHOGENIC_PROTOZOA_CONSORTIUM = "STRUCTURAL_GENOMICS_OF_PATHOGENIC_PROTOZOA_CONSORTIUM",
STRUCTURAL_PROTEOMICS_IN_EUROPE = "STRUCTURAL_PROTEOMICS_IN_EUROPE",
STRUCTURAL_PROTEOMICS_IN_EUROPE_2 = "STRUCTURAL_PROTEOMICS_IN_EUROPE_2",
STRUCTURES_OF_MTB_PROTEINS_CONFERRING_SUSCEPTIBILITY_TO_KNOWN_MTB_INHIBITORS = "STRUCTURES_OF_MTB_PROTEINS_CONFERRING_SUSCEPTIBILITY_TO_KNOWN_MTB_INHIBITORS",
STRUCTURE_2_FUNCTION_PROJECT = "STRUCTURE_2_FUNCTION_PROJECT",
STRUCTURE_DYNAMICS_AND_ACTIVATION_MECHANISMS_OF_CHEMOKINE_RECEPTORS = "STRUCTURE_DYNAMICS_AND_ACTIVATION_MECHANISMS_OF_CHEMOKINE_RECEPTORS",
STRUCTURE_FUNCTION_ANALYSIS_OF_POLYMORPHIC_CDI_TOXIN_IMMUNITY_PROTEIN_COMPLEXES = "STRUCTURE_FUNCTION_ANALYSIS_OF_POLYMORPHIC_CDI_TOXIN_IMMUNITY_PROTEIN_COMPLEXES",
STRUCTURE_FUNCTION_STUDIES_OF_TIGHT_JUNCTION_MEMBRANE_PROTEINS = "STRUCTURE_FUNCTION_STUDIES_OF_TIGHT_JUNCTION_MEMBRANE_PROTEINS",
TB_STRUCTURAL_GENOMICS_CONSORTIUM = "TB_STRUCTURAL_GENOMICS_CONSORTIUM",
TRANSCONTINENTAL_EM_INITIATIVE_FOR_MEMBRANE_PROTEIN_STRUCTURE = "TRANSCONTINENTAL_EM_INITIATIVE_FOR_MEMBRANE_PROTEIN_STRUCTURE",
TRANSMEMBRANE_PROTEIN_CENTER = "TRANSMEMBRANE_PROTEIN_CENTER"
}
export enum PdbxSgProjectId {
_1 = "_1",
_10 = "_10",
_2 = "_2",
_3 = "_3",
_4 = "_4",
_5 = "_5",
_6 = "_6",
_7 = "_7",
_8 = "_8",
_9 = "_9"
}
export enum PdbxSgProjectInitialOfCenter {
ATCG_3_D = "ATCG_3_D",
BIGS = "BIGS",
BSGC = "BSGC",
BSGI = "BSGI",
CEBS = "CEBS",
CELLMAT = "CELLMAT",
CESG = "CESG",
CHSAM = "CHSAM",
CHTSB = "CHTSB",
CSGID = "CSGID",
CSMP = "CSMP",
GPCR = "GPCR",
IFN = "IFN",
ISFI = "ISFI",
ISPC = "ISPC",
JCSG = "JCSG",
MCMR = "MCMR",
MCSG = "MCSG",
MPID = "MPID",
MPP = "MPP",
MPSBC = "MPSBC",
MP_SBY_NMR = "MP_SBY_NMR",
MSGP = "MSGP",
MSGPP = "MSGPP",
MTBI = "MTBI",
NAT_PRO = "NAT_PRO",
NESG = "NESG",
NH_RS = "NH_RS",
NPC_XSTALS = "NPC_XSTALS",
NYCOMPS = "NYCOMPS",
NYSGRC = "NYSGRC",
NYSGXRC = "NYSGXRC",
OCSP = "OCSP",
OPPF = "OPPF",
PCSEP = "PCSEP",
PSF = "PSF",
RSGI = "RSGI",
SASTAD = "SASTAD",
SECSG = "SECSG",
SGC = "SGC",
SGCGES = "SGCGES",
SGPP = "SGPP",
SPINE = "SPINE",
SPINE_2 = "SPINE_2",
SSGCID = "SSGCID",
SSPF = "SSPF",
STEMCELL = "STEMCELL",
S_2_F = "S_2_F",
TBSGC = "TBSGC",
TCELL = "TCELL",
TEMIMPS = "TEMIMPS",
TJMP = "TJMP",
TMPC = "TMPC",
TRANSPORT_PDB = "TRANSPORT_PDB",
UC_4_CDI = "UC_4_CDI",
XMTB = "XMTB",
YSG = "YSG"
}
export enum PdbxSgProjectProjectName {
ENZYME_FUNCTION_INITIATIVE = "ENZYME_FUNCTION_INITIATIVE",
NIAID_NATIONAL_INSTITUTE_OF_ALLERGY_AND_INFECTIOUS_DISEASES = "NIAID_NATIONAL_INSTITUTE_OF_ALLERGY_AND_INFECTIOUS_DISEASES",
NPPSFA_NATIONAL_PROJECT_ON_PROTEIN_STRUCTURAL_AND_FUNCTIONAL_ANALYSES = "NPPSFA_NATIONAL_PROJECT_ON_PROTEIN_STRUCTURAL_AND_FUNCTIONAL_ANALYSES",
PSI_BIOLOGY = "PSI_BIOLOGY",
PSI_PROTEIN_STRUCTURE_INITIATIVE = "PSI_PROTEIN_STRUCTURE_INITIATIVE"
}
export enum PdbxAuditRevisionDetailsDataContentType {
NMR_RESTRAINTS = "NMR_RESTRAINTS",
NMR_SHIFTS = "NMR_SHIFTS",
STRUCTURE_FACTORS = "STRUCTURE_FACTORS",
STRUCTURE_MODEL = "STRUCTURE_MODEL"
}
export enum PdbxAuditRevisionDetailsProvider {
AUTHOR = "AUTHOR",
REPOSITORY = "REPOSITORY"
}
export enum PdbxAuditRevisionDetailsType {
COORDINATE_REPLACEMENT = "COORDINATE_REPLACEMENT",
INITIAL_RELEASE = "INITIAL_RELEASE",
OBSOLETE = "OBSOLETE"
}
export enum PdbxAuditRevisionHistoryDataContentType {
NMR_RESTRAINTS = "NMR_RESTRAINTS",
NMR_SHIFTS = "NMR_SHIFTS",
STRUCTURE_FACTORS = "STRUCTURE_FACTORS",
STRUCTURE_MODEL = "STRUCTURE_MODEL"
}
export enum PdbxDatabasePdbObsSprId {
OBSLTE = "OBSLTE",
SPRSDE = "SPRSDE"
}
export enum PdbxDatabaseStatusSgEntry {
N = "N",
Y = "Y"
}
export enum PdbxDatabaseStatusDepositSite {
BMRB = "BMRB",
BNL = "BNL",
NDB = "NDB",
PDBE = "PDBE",
PDBJ = "PDBJ",
RCSB = "RCSB"
}
export enum PdbxDatabaseStatusMethodsDevelopmentCategory {
CAPRI = "CAPRI",
CASD_NMR = "CASD_NMR",
CASP = "CASP",
D_3_R = "D_3_R",
FOLD_IT = "FOLD_IT",
GPCR_DOCK = "GPCR_DOCK",
RNA_PUZZLES = "RNA_PUZZLES"
}
export enum PdbxDatabaseStatusPdbFormatCompatible {
N = "N",
Y = "Y"
}
export enum PdbxDatabaseStatusProcessSite {
BNL = "BNL",
NDB = "NDB",
PDBE = "PDBE",
PDBJ = "PDBJ",
RCSB = "RCSB"
}
export enum PdbxDatabaseStatusStatusCode {
AUCO = "AUCO",
AUTH = "AUTH",
BIB = "BIB",
DEL = "DEL",
HOLD = "HOLD",
HPUB = "HPUB",
OBS = "OBS",
POLC = "POLC",
PROC = "PROC",
REFI = "REFI",
REL = "REL",
REPL = "REPL",
REV = "REV",
RMVD = "RMVD",
TRSF = "TRSF",
UPD = "UPD",
WAIT = "WAIT",
WDRN = "WDRN"
}
export enum PdbxDatabaseStatusStatusCodeCs {
AUTH = "AUTH",
HOLD = "HOLD",
HPUB = "HPUB",
OBS = "OBS",
POLC = "POLC",
PROC = "PROC",
REL = "REL",
REPL = "REPL",
RMVD = "RMVD",
WAIT = "WAIT",
WDRN = "WDRN"
}
export enum PdbxDatabaseStatusStatusCodeMr {
AUTH = "AUTH",
HOLD = "HOLD",
HPUB = "HPUB",
OBS = "OBS",
POLC = "POLC",
PROC = "PROC",
REL = "REL",
REPL = "REPL",
RMVD = "RMVD",
WAIT = "WAIT",
WDRN = "WDRN"
}
export enum PdbxDatabaseStatusStatusCodeSf {
AUTH = "AUTH",
HOLD = "HOLD",
HPUB = "HPUB",
OBS = "OBS",
POLC = "POLC",
PROC = "PROC",
REL = "REL",
REPL = "REPL",
RMVD = "RMVD",
WAIT = "WAIT",
WDRN = "WDRN"
}
export enum PdbxDepositGroupGroupType {
CHANGED_STATE = "CHANGED_STATE",
GROUND_STATE = "GROUND_STATE",
UNDEFINED = "UNDEFINED"
}
export enum PdbxMoleculeFeaturesClass {
ANTAGONIST = "ANTAGONIST",
ANTHELMINTIC = "ANTHELMINTIC",
ANTIBIOTIC = "ANTIBIOTIC",
ANTIBIOTIC_ANTHELMINTIC = "ANTIBIOTIC_ANTHELMINTIC",
ANTIBIOTIC_ANTIMICROBIAL = "ANTIBIOTIC_ANTIMICROBIAL",
ANTIBIOTIC_ANTINEOPLASTIC = "ANTIBIOTIC_ANTINEOPLASTIC",
ANTICANCER = "ANTICANCER",
ANTICOAGULANT = "ANTICOAGULANT",
ANTICOAGULANT_ANTITHROMBOTIC = "ANTICOAGULANT_ANTITHROMBOTIC",
ANTIFUNGAL = "ANTIFUNGAL",
ANTIINFLAMMATORY = "ANTIINFLAMMATORY",
ANTIMICROBIAL = "ANTIMICROBIAL",
ANTIMICROBIAL_ANTIPARASITIC_ANTIBIOTIC = "ANTIMICROBIAL_ANTIPARASITIC_ANTIBIOTIC",
ANTIMICROBIAL_ANTIRETROVIRAL = "ANTIMICROBIAL_ANTIRETROVIRAL",
ANTIMICROBIAL_ANTITUMOR = "ANTIMICROBIAL_ANTITUMOR",
ANTINEOPLASTIC = "ANTINEOPLASTIC",
ANTIPARASITIC = "ANTIPARASITIC",
ANTIRETROVIRAL = "ANTIRETROVIRAL",
ANTITHROMBOTIC = "ANTITHROMBOTIC",
ANTITUMOR = "ANTITUMOR",
ANTIVIRAL = "ANTIVIRAL",
CASPASE_INHIBITOR = "CASPASE_INHIBITOR",
CHAPERONE_BINDING = "CHAPERONE_BINDING",
ENZYME_INHIBITOR = "ENZYME_INHIBITOR",
GROWTH_FACTOR = "GROWTH_FACTOR",
IMMUNOSUPPRESSANT = "IMMUNOSUPPRESSANT",
INHIBITOR = "INHIBITOR",
LANTIBIOTIC = "LANTIBIOTIC",
METABOLISM = "METABOLISM",
METAL_TRANSPORT = "METAL_TRANSPORT",
OXIDATION_REDUCTION = "OXIDATION_REDUCTION",
RECEPTOR = "RECEPTOR",
THROMBIN_INHIBITOR = "THROMBIN_INHIBITOR",
THROMBIN_INHIBITOR_TRYPSIN_INHIBITOR = "THROMBIN_INHIBITOR_TRYPSIN_INHIBITOR",
TOXIN = "TOXIN",
TRANSPORT_ACTIVATOR = "TRANSPORT_ACTIVATOR",
TRYPSIN_INHIBITOR = "TRYPSIN_INHIBITOR",
UNKNOWN = "UNKNOWN"
}
export enum PdbxMoleculeFeaturesType {
AMINOGLYCOSIDE = "AMINOGLYCOSIDE",
AMINO_ACID = "AMINO_ACID",
ANSAMYCIN = "ANSAMYCIN",
ANTHRACYCLINE = "ANTHRACYCLINE",
ANTHRAQUINONE = "ANTHRAQUINONE",
CHALKOPHORE = "CHALKOPHORE",
CHALKOPHORE_POLYPEPTIDE = "CHALKOPHORE_POLYPEPTIDE",
CHROMOPHORE = "CHROMOPHORE",
CYCLIC_DEPSIPEPTIDE = "CYCLIC_DEPSIPEPTIDE",
CYCLIC_LIPOPEPTIDE = "CYCLIC_LIPOPEPTIDE",
CYCLIC_PEPTIDE = "CYCLIC_PEPTIDE",
GLYCOPEPTIDE = "GLYCOPEPTIDE",
HETEROCYCLIC = "HETEROCYCLIC",
IMINO_SUGAR = "IMINO_SUGAR",
KETO_ACID = "KETO_ACID",
LIPOGLYCOPEPTIDE = "LIPOGLYCOPEPTIDE",
LIPOPEPTIDE = "LIPOPEPTIDE",
MACROLIDE = "MACROLIDE",
NON_POLYMER = "NON_POLYMER",
NUCLEOSIDE = "NUCLEOSIDE",
OLIGOPEPTIDE = "OLIGOPEPTIDE",
OLIGOSACCHARIDE = "OLIGOSACCHARIDE",
PEPTAIBOL = "PEPTAIBOL",
PEPTIDE_LIKE = "PEPTIDE_LIKE",
POLYCYCLIC = "POLYCYCLIC",
POLYPEPTIDE = "POLYPEPTIDE",
POLYSACCHARIDE = "POLYSACCHARIDE",
QUINOLONE = "QUINOLONE",
SIDEROPHORE = "SIDEROPHORE",
THIOLACTONE = "THIOLACTONE",
THIOPEPTIDE = "THIOPEPTIDE",
UNKNOWN = "UNKNOWN"
}
export enum PdbxNmrExptlSampleState {
ANISOTROPIC = "ANISOTROPIC",
ISOTROPIC = "ISOTROPIC"
}
export enum PdbxNmrExptlSampleConditionsIonicStrengthUnits {
M = "M",
M_M = "M_M",
NOT_DEFINED = "NOT_DEFINED"
}
export enum PdbxNmrExptlSampleConditionsPhUnits {
NOT_DEFINED = "NOT_DEFINED",
P_D = "P_D",
P_H = "P_H",
P_H_ = "P_H_"
}
export enum PdbxNmrExptlSampleConditionsTemperatureUnits {
C = "C",
K = "K",
NOT_DEFINED = "NOT_DEFINED"
}
export enum PdbxNmrSampleDetailsType {
BICELLE = "BICELLE",
EMULSION = "EMULSION",
FIBER = "FIBER",
FIBROUS_PROTEIN = "FIBROUS_PROTEIN",
FILAMENTOUS_VIRUS = "FILAMENTOUS_VIRUS",
GEL_SOLID = "GEL_SOLID",
GEL_SOLUTION = "GEL_SOLUTION",
LIPOSOME = "LIPOSOME",
LYOPHILIZED_POWDER = "LYOPHILIZED_POWDER",
MEMBRANE = "MEMBRANE",
MICELLE = "MICELLE",
ORIENTED_MEMBRANE_FILM = "ORIENTED_MEMBRANE_FILM",
POLYCRYSTALLINE_POWDER = "POLYCRYSTALLINE_POWDER",
REVERSE_MICELLE = "REVERSE_MICELLE",
SINGLE_CRYSTAL = "SINGLE_CRYSTAL",
SOLID = "SOLID",
SOLUTION = "SOLUTION"
}
export enum PdbxSerialCrystallographySampleDeliveryMethod {
FIXED_TARGET = "FIXED_TARGET",
INJECTION = "INJECTION"
}
export enum RcsbBindingSource {
BINDINGDB = "BINDINGDB",
BINDINGMOAD = "BINDINGMOAD",
PDBBIND = "PDBBIND"
}
export enum RefineLsMatrixType {
ATOMBLOCK = "ATOMBLOCK",
DIAGONAL = "DIAGONAL",
FULL = "FULL",
FULLCYCLE = "FULLCYCLE",
SPARSE = "SPARSE",
USERBLOCK = "USERBLOCK"
}
export enum RefinePdbxTlsResidualAdpFlag {
LIKELY_RESIDUAL = "LIKELY_RESIDUAL",
UNVERIFIED = "UNVERIFIED"
}
export enum SoftwareLanguage {
ADA = "ADA",
ASSEMBLER = "ASSEMBLER",
AWK = "AWK",
BASIC = "BASIC",
C = "C",
CSH = "CSH",
C_ = "C_",
C_C = "C_C",
FORTRAN = "FORTRAN",
FORTRAN_77 = "FORTRAN_77",
FORTRAN_77_ = "FORTRAN_77_",
FORTRAN_90 = "FORTRAN_90",
JAVA = "JAVA",
JAVA_FORTRAN = "JAVA_FORTRAN",
KSH = "KSH",
OTHER = "OTHER",
PASCAL = "PASCAL",
PERL = "PERL",
PYTHON = "PYTHON",
PYTHON_C = "PYTHON_C",
SH = "SH",
TCL = "TCL"
}
export enum SoftwareType {
FILTER = "FILTER",
JIFFY = "JIFFY",
LIBRARY = "LIBRARY",
OTHER = "OTHER",
PACKAGE = "PACKAGE",
PROGRAM = "PROGRAM"
}
export enum StructPdbxCaspFlag {
N = "N",
Y = "Y"
}
export enum SymmetryCellSetting {
CUBIC = "CUBIC",
HEXAGONAL = "HEXAGONAL",
MONOCLINIC = "MONOCLINIC",
ORTHORHOMBIC = "ORTHORHOMBIC",
RHOMBOHEDRAL = "RHOMBOHEDRAL",
TETRAGONAL = "TETRAGONAL",
TRICLINIC = "TRICLINIC",
TRIGONAL = "TRIGONAL"
}
// ====================================================
// END: Typescript template
// ====================================================
/** Unrepresentable type */
export type Unrepresentable = any;
// ====================================================
// Documents
......@@ -1199,72 +13,70 @@ export enum SymmetryCellSetting {
export namespace AssemblySymmetry {
export type Variables = {
readonly pdbId: string;
pdbId: string;
};
export type Query = {
readonly __typename?: "Query";
__typename?: "Query";
readonly assemblies?: ReadonlyArray<Assemblies | null> | null;
assemblies: Maybe<(Maybe<Assemblies>)[]>;
};
export type Assemblies = {
readonly __typename?: "CoreAssembly";
readonly pdbx_struct_assembly?: PdbxStructAssembly | null;
__typename?: "CoreAssembly";
readonly rcsb_struct_symmetry?: ReadonlyArray<RcsbStructSymmetry | null> | null;
pdbx_struct_assembly: Maybe<PdbxStructAssembly>;
readonly rcsb_struct_symmetry_provenance?: string | null;
rcsb_struct_symmetry: Maybe<(Maybe<RcsbStructSymmetry>)[]>;
};
export type PdbxStructAssembly = {
readonly __typename?: "PdbxStructAssembly";
__typename?: "PdbxStructAssembly";
readonly id: string;
id: string;
};
export type RcsbStructSymmetry = {
readonly __typename?: "RcsbStructSymmetry";
__typename?: "RcsbStructSymmetry";
readonly clusters: ReadonlyArray<Clusters | null>;
clusters: (Maybe<Clusters>)[];
readonly kind: RcsbStructSymmetryKind;
kind: string;
readonly oligomeric_state: string;
oligomeric_state: string;
readonly rotation_axes?: ReadonlyArray<RotationAxes | null> | null;
rotation_axes: Maybe<(Maybe<RotationAxes>)[]>;
readonly stoichiometry: ReadonlyArray<string | null>;
stoichiometry: (Maybe<string>)[];
readonly symbol: string;
symbol: string;
readonly type: RcsbStructSymmetryType;
type: string;
};
export type Clusters = {
readonly __typename?: "RcsbStructSymmetryClusters";
__typename?: "RcsbStructSymmetryClusters";
readonly avg_rmsd?: number | null;
avg_rmsd: Maybe<number>;
readonly members: ReadonlyArray<Members | null>;
members: (Maybe<Members>)[];
};
export type Members = {
readonly __typename?: "ClustersMembers";
__typename?: "ClustersMembers";
readonly asym_id: string;
asym_id: string;
readonly pdbx_struct_oper_list_ids?: ReadonlyArray<string | null> | null;
pdbx_struct_oper_list_ids: Maybe<(Maybe<string>)[]>;
};
export type RotationAxes = {
readonly __typename?: "RcsbStructSymmetryRotationAxes";
__typename?: "RcsbStructSymmetryRotationAxes";
readonly start: ReadonlyArray<number | null>;
start: (Maybe<number>)[];
readonly end: ReadonlyArray<number | null>;
end: (Maybe<number>)[];
readonly order?: number | null;
order: Maybe<number>;
};
}
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