This commit brings in considerable amount of work. When working on this issue everything was so tied together, that I have abandoned all attempts to split it into multiple commits. There are following changes and more:

* Implementation of lightweight chroot for containing the application in single directory tree.
* Design changes in scripts and daemons to implement the lightweight chroot.
* Many configuration file changes to make everything work properly.
* Makefile additions, new targets related to running
* Updated development documentation page.

(Redmine issue: #4216)