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40 results

loci.ts

Blame
    • midlik's avatar
      c7cee63c
      Volumes & Segmentations extension (#668) · c7cee63c
      midlik authored
      * Created CellStar state action
      
      * CellStar: download metadata
      
      * Right panel - CellStar UI
      
      * CellStar: Lattice segmenatation and fitted PDB models
      
      * CellStar: Support for source-database entry ID from metadata
      
      * CellStar: Mesh segmentation
      
      * CellStar: Switching between multiple entries
      
      * CellStar: Changed default API URL
      
      * UI updates
      
      * CellStar: Clicking on meshes shows annotations...
      
      * support info in Converted param
      
      * support color/size in VolumeRepresentation3DHelpers.getDefaultParams
      
      * support multi-visual volume representations
      
      - repr can provide list of keys
      - create visual for each key
      
      * add volume segmentation support
      
      - segmentation property
      - segment loci & location
      
      * add volume-segment color theme
      
      * add volume segment representation
      
      * use optional chaining
      
      * add support for volume segmentation cif
      
      * improve isosurface bounding-sphere
      
      * fix segcif schema type
      
      * CellStar: Highlighting segments on hover in the right panel
      
      * CellStar: Using new Mol*-native segment visualization
      
      * lint
      
      * Segmentation volume can have custom segment labels
      
      * CellStar: Segment labels for Mol*-native segments
      
      * CellStar: Removed old implementation of segments
      
      * CellStar: Rename CellStarLatticeSegmentationData2 -> CellStarLatticeSegmentationData
      
      * CellStar: Default volume server is https://cellstar.ncbr.muni.cz
      
      
      
      * CellStar: debugging
      
      * CellStar: Fixed bug in LatticeSegmentation (scaling)
      
      * CellStar: Partially savable state
      
      * CellStar: WaitingSlider
      
      * CellStar: Opacity changed via params
      
      * Savable state for opacity
      
      * CellStar: Changing UI in animations
      
      * CellStar: Savable state for whole current UI
      
      * CellStar: Savable state for segment labels
      
      * CellStar: Source can be 'idr', CellStarVolumeServerConfig.DefaultServer
      
      * CellStar: Select segment for lattice segmentation
      
      * CellStar: Select segment, complete
      
      * CellStar: Changes visible labels to "Volume & Segmentation"
      
      * CellStar: Drop list with available entries
      
      * CellStar: Volume type switching (partial)
      
      * CellStar: Trying to set direct-volume control points
      
      * CellStar: Volume visual switching
      
      * Mesh extension: removed molstar-lib-imports
      
      * CellStar: Global options
      
      * CellStar: Updated file headers and `CHANGELOG.md`
      
      * CellStar: UI controls disabled while executing change
      
      * CellStar: Hidden state nodes, fixed bug with removed global state
      
      * CellStar: Volume opacity slider
      
      * CellStar extension renamed to Volseg
      
      * UI tweaks
      
      Co-authored-by: default avatarAlexander Rose <alexander.rose@weirdbyte.de>
      Volumes & Segmentations extension (#668)
      midlik authored
      * Created CellStar state action
      
      * CellStar: download metadata
      
      * Right panel - CellStar UI
      
      * CellStar: Lattice segmenatation and fitted PDB models
      
      * CellStar: Support for source-database entry ID from metadata
      
      * CellStar: Mesh segmentation
      
      * CellStar: Switching between multiple entries
      
      * CellStar: Changed default API URL
      
      * UI updates
      
      * CellStar: Clicking on meshes shows annotations...
      
      * support info in Converted param
      
      * support color/size in VolumeRepresentation3DHelpers.getDefaultParams
      
      * support multi-visual volume representations
      
      - repr can provide list of keys
      - create visual for each key
      
      * add volume segmentation support
      
      - segmentation property
      - segment loci & location
      
      * add volume-segment color theme
      
      * add volume segment representation
      
      * use optional chaining
      
      * add support for volume segmentation cif
      
      * improve isosurface bounding-sphere
      
      * fix segcif schema type
      
      * CellStar: Highlighting segments on hover in the right panel
      
      * CellStar: Using new Mol*-native segment visualization
      
      * lint
      
      * Segmentation volume can have custom segment labels
      
      * CellStar: Segment labels for Mol*-native segments
      
      * CellStar: Removed old implementation of segments
      
      * CellStar: Rename CellStarLatticeSegmentationData2 -> CellStarLatticeSegmentationData
      
      * CellStar: Default volume server is https://cellstar.ncbr.muni.cz
      
      
      
      * CellStar: debugging
      
      * CellStar: Fixed bug in LatticeSegmentation (scaling)
      
      * CellStar: Partially savable state
      
      * CellStar: WaitingSlider
      
      * CellStar: Opacity changed via params
      
      * Savable state for opacity
      
      * CellStar: Changing UI in animations
      
      * CellStar: Savable state for whole current UI
      
      * CellStar: Savable state for segment labels
      
      * CellStar: Source can be 'idr', CellStarVolumeServerConfig.DefaultServer
      
      * CellStar: Select segment for lattice segmentation
      
      * CellStar: Select segment, complete
      
      * CellStar: Changes visible labels to "Volume & Segmentation"
      
      * CellStar: Drop list with available entries
      
      * CellStar: Volume type switching (partial)
      
      * CellStar: Trying to set direct-volume control points
      
      * CellStar: Volume visual switching
      
      * Mesh extension: removed molstar-lib-imports
      
      * CellStar: Global options
      
      * CellStar: Updated file headers and `CHANGELOG.md`
      
      * CellStar: UI controls disabled while executing change
      
      * CellStar: Hidden state nodes, fixed bug with removed global state
      
      * CellStar: Volume opacity slider
      
      * CellStar extension renamed to Volseg
      
      * UI tweaks
      
      Co-authored-by: default avatarAlexander Rose <alexander.rose@weirdbyte.de>