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Michal Malý
Molstar
Commits
03067ca6
Commit
03067ca6
authored
5 years ago
by
Alexander Rose
Browse files
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Plain Diff
wip, structure tools quality option
parent
a69f1337
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Changes
2
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2 changed files
src/mol-plugin/ui/structure/representation.tsx
+14
-6
14 additions, 6 deletions
src/mol-plugin/ui/structure/representation.tsx
src/mol-plugin/util/structure-representation-helper.ts
+40
-19
40 additions, 19 deletions
src/mol-plugin/util/structure-representation-helper.ts
with
54 additions
and
25 deletions
src/mol-plugin/ui/structure/representation.tsx
+
14
−
6
View file @
03067ca6
...
@@ -12,6 +12,7 @@ import { ColorOptions, ParameterControls } from '../controls/parameters';
...
@@ -12,6 +12,7 @@ import { ColorOptions, ParameterControls } from '../controls/parameters';
import
{
Color
}
from
'
../../../mol-util/color
'
;
import
{
Color
}
from
'
../../../mol-util/color
'
;
import
{
ButtonSelect
,
Options
}
from
'
../controls/common
'
import
{
ButtonSelect
,
Options
}
from
'
../controls/common
'
import
{
ParamDefinition
as
PD
}
from
'
../../../mol-util/param-definition
'
;
import
{
ParamDefinition
as
PD
}
from
'
../../../mol-util/param-definition
'
;
import
{
VisualQuality
,
VisualQualityOptions
}
from
'
../../../mol-geo/geometry/base
'
;
abstract
class
BaseStructureRepresentationControls
extends
PluginUIComponent
{
abstract
class
BaseStructureRepresentationControls
extends
PluginUIComponent
{
onChange
=
(
value
:
string
)
=>
{
onChange
=
(
value
:
string
)
=>
{
...
@@ -94,23 +95,30 @@ export class StructureRepresentationControls extends PluginUIComponent {
...
@@ -94,23 +95,30 @@ export class StructureRepresentationControls extends PluginUIComponent {
}
}
onChange
=
async
(
p
:
{
param
:
PD
.
Base
<
any
>
,
name
:
string
,
value
:
any
})
=>
{
onChange
=
async
(
p
:
{
param
:
PD
.
Base
<
any
>
,
name
:
string
,
value
:
any
})
=>
{
if
(
p
.
name
===
'
showHydroge
ns
'
)
{
if
(
p
.
name
===
'
optio
ns
'
)
{
await
this
.
plugin
.
helpers
.
structureRepresentation
.
setIgnoreHydrogens
(
!
p
.
value
)
await
this
.
plugin
.
helpers
.
structureRepresentation
.
setIgnoreHydrogens
(
!
p
.
value
.
showHydrogens
)
}
await
this
.
plugin
.
helpers
.
structureRepresentation
.
setQuality
(
p
.
value
.
visualQuality
)
this
.
forceUpdate
()
this
.
forceUpdate
()
}
}
}
get
params
()
{
get
params
()
{
const
values
=
this
.
values
const
{
options
}
=
this
.
values
return
{
return
{
showHydrogens
:
PD
.
Boolean
(
values
.
showHydrogens
)
options
:
PD
.
Group
({
showHydrogens
:
PD
.
Boolean
(
options
.
showHydrogens
),
visualQuality
:
PD
.
Select
<
VisualQuality
>
(
options
.
visualQuality
,
VisualQualityOptions
),
},
{
isExpanded
:
true
})
}
}
}
}
get
values
()
{
get
values
()
{
const
{
structureRepresentation
:
rep
}
=
this
.
plugin
.
helpers
const
{
structureRepresentation
:
rep
}
=
this
.
plugin
.
helpers
return
{
return
{
showHydrogens
:
!
rep
.
ignoreHydrogens
options
:
{
showHydrogens
:
!
rep
.
ignoreHydrogens
,
visualQuality
:
rep
.
quality
,
}
}
}
}
}
...
...
This diff is collapsed.
Click to expand it.
src/mol-plugin/util/structure-representation-helper.ts
+
40
−
19
View file @
03067ca6
...
@@ -6,7 +6,7 @@
...
@@ -6,7 +6,7 @@
import
{
PluginStateObject
as
PSO
}
from
'
../../mol-plugin/state/objects
'
;
import
{
PluginStateObject
as
PSO
}
from
'
../../mol-plugin/state/objects
'
;
import
{
StateTransforms
}
from
'
../../mol-plugin/state/transforms
'
;
import
{
StateTransforms
}
from
'
../../mol-plugin/state/transforms
'
;
import
{
StateTransformer
,
StateSelection
,
StateObjectCell
,
StateTransform
}
from
'
../../mol-state
'
;
import
{
StateTransformer
,
StateSelection
,
StateObjectCell
,
StateTransform
,
StateBuilder
}
from
'
../../mol-state
'
;
import
{
StructureElement
,
Structure
,
StructureSelection
,
QueryContext
}
from
'
../../mol-model/structure
'
;
import
{
StructureElement
,
Structure
,
StructureSelection
,
QueryContext
}
from
'
../../mol-model/structure
'
;
import
{
PluginContext
}
from
'
../context
'
;
import
{
PluginContext
}
from
'
../context
'
;
import
{
StructureRepresentation3DHelpers
}
from
'
../state/transforms/representation
'
;
import
{
StructureRepresentation3DHelpers
}
from
'
../state/transforms/representation
'
;
...
@@ -14,8 +14,10 @@ import Expression from '../../mol-script/language/expression';
...
@@ -14,8 +14,10 @@ import Expression from '../../mol-script/language/expression';
import
{
compile
}
from
'
../../mol-script/runtime/query/compiler
'
;
import
{
compile
}
from
'
../../mol-script/runtime/query/compiler
'
;
import
{
StructureSelectionQueries
as
Q
}
from
'
../util/structure-selection-helper
'
;
import
{
StructureSelectionQueries
as
Q
}
from
'
../util/structure-selection-helper
'
;
import
{
MolScriptBuilder
as
MS
}
from
'
../../mol-script/language/builder
'
;
import
{
MolScriptBuilder
as
MS
}
from
'
../../mol-script/language/builder
'
;
import
{
VisualQuality
}
from
'
../../mol-geo/geometry/base
'
;
type
StructureTransform
=
StateObjectCell
<
PSO
.
Molecule
.
Structure
,
StateTransform
<
StateTransformer
<
any
,
PSO
.
Molecule
.
Structure
,
any
>>>
type
StructureTransform
=
StateObjectCell
<
PSO
.
Molecule
.
Structure
,
StateTransform
<
StateTransformer
<
any
,
PSO
.
Molecule
.
Structure
,
any
>>>
type
RepresentationTransform
=
StateObjectCell
<
PSO
.
Molecule
.
Structure
.
Representation3D
,
StateTransform
<
StateTransformer
<
any
,
PSO
.
Molecule
.
Structure
.
Representation3D
,
any
>>>
const
RepresentationManagerTag
=
'
representation-controls
'
const
RepresentationManagerTag
=
'
representation-controls
'
export
function
getRepresentationManagerTag
(
type
:
string
)
{
export
function
getRepresentationManagerTag
(
type
:
string
)
{
...
@@ -65,9 +67,10 @@ export class StructureRepresentationHelper {
...
@@ -65,9 +67,10 @@ export class StructureRepresentationHelper {
}
else
{
}
else
{
const
combinedLoci
=
getCombinedLoci
(
modifier
,
loci
,
StructureElement
.
Loci
(
s
,
[]))
const
combinedLoci
=
getCombinedLoci
(
modifier
,
loci
,
StructureElement
.
Loci
(
s
,
[]))
const
params
=
StructureRepresentation3DHelpers
.
getDefaultParams
(
this
.
plugin
,
type
as
any
,
s
)
const
params
=
StructureRepresentation3DHelpers
.
getDefaultParams
(
this
.
plugin
,
type
as
any
,
s
)
if
(
params
.
type
.
params
.
ignoreHydrogens
!==
undefined
)
{
params
.
type
.
params
.
ignoreHydrogens
=
this
.
_ignoreHydrogens
const
p
=
params
.
type
.
params
}
if
(
p
.
ignoreHydrogens
!==
undefined
)
p
.
ignoreHydrogens
=
this
.
_ignoreHydrogens
if
(
p
.
quality
!==
undefined
)
p
.
quality
=
this
.
_quality
update
.
to
(
structure
.
transform
.
ref
)
update
.
to
(
structure
.
transform
.
ref
)
.
apply
(
.
apply
(
...
@@ -119,32 +122,50 @@ export class StructureRepresentationHelper {
...
@@ -119,32 +122,50 @@ export class StructureRepresentationHelper {
await
this
.
plugin
.
runTask
(
state
.
updateTree
(
update
,
{
doNotUpdateCurrent
:
true
}))
await
this
.
plugin
.
runTask
(
state
.
updateTree
(
update
,
{
doNotUpdateCurrent
:
true
}))
}
}
private
_ignoreHydrogens
=
false
async
eachRepresentation
(
callback
:
(
repr
:
RepresentationTransform
,
update
:
StateBuilder
.
Root
)
=>
void
)
{
get
ignoreHydrogens
()
{
return
this
.
_ignoreHydrogens
}
async
setIgnoreHydrogens
(
ignoreHydrogens
:
boolean
)
{
if
(
ignoreHydrogens
===
this
.
_ignoreHydrogens
)
return
const
{
registry
}
=
this
.
plugin
.
structureRepresentation
const
{
registry
}
=
this
.
plugin
.
structureRepresentation
const
state
=
this
.
plugin
.
state
.
dataState
;
const
state
=
this
.
plugin
.
state
.
dataState
;
const
update
=
state
.
build
()
const
update
=
state
.
build
()
const
structures
=
state
.
select
(
StateSelection
.
Generators
.
rootsOfType
(
PSO
.
Molecule
.
Structure
))
const
structures
=
state
.
select
(
StateSelection
.
Generators
.
rootsOfType
(
PSO
.
Molecule
.
Structure
))
for
(
const
structure
of
structures
)
{
for
(
const
structure
of
structures
)
{
for
(
let
i
=
0
,
il
=
registry
.
types
.
length
;
i
<
il
;
++
i
)
{
for
(
let
i
=
0
,
il
=
registry
.
types
.
length
;
i
<
il
;
++
i
)
{
const
type
=
registry
.
types
[
i
][
0
]
const
repr
=
this
.
getRepresentation
(
structure
.
transform
.
ref
,
registry
.
types
[
i
][
0
])
const
repr
=
this
.
getRepresentation
(
structure
.
transform
.
ref
,
type
)
if
(
repr
)
callback
(
repr
,
update
)
if
(
repr
&&
repr
.
params
&&
repr
.
params
.
values
.
type
.
params
.
ignoreHydrogens
!==
undefined
)
{
}
}
await
this
.
plugin
.
runTask
(
state
.
updateTree
(
update
,
{
doNotUpdateCurrent
:
true
}))
}
private
_ignoreHydrogens
=
false
get
ignoreHydrogens
()
{
return
this
.
_ignoreHydrogens
}
async
setIgnoreHydrogens
(
ignoreHydrogens
:
boolean
)
{
if
(
ignoreHydrogens
===
this
.
_ignoreHydrogens
)
return
await
this
.
eachRepresentation
((
repr
,
update
)
=>
{
if
(
repr
.
params
&&
repr
.
params
.
values
.
type
.
params
.
ignoreHydrogens
!==
undefined
)
{
const
{
name
,
params
}
=
repr
.
params
.
values
.
type
const
{
name
,
params
}
=
repr
.
params
.
values
.
type
update
.
to
(
repr
.
transform
.
ref
).
update
(
update
.
to
(
repr
.
transform
.
ref
).
update
(
StateTransforms
.
Representation
.
StructureRepresentation3D
,
StateTransforms
.
Representation
.
StructureRepresentation3D
,
props
=>
({
...
props
,
type
:
{
name
,
params
:
{
...
params
,
ignoreHydrogens
}}})
props
=>
({
...
props
,
type
:
{
name
,
params
:
{
...
params
,
ignoreHydrogens
}}})
)
)
}
}
})
this
.
_ignoreHydrogens
=
ignoreHydrogens
}
}
}
await
this
.
plugin
.
runTask
(
state
.
updateTree
(
update
,
{
doNotUpdateCurrent
:
true
}))
this
.
_ignoreHydrogens
=
ignoreHydrogens
private
_quality
=
'
auto
'
as
VisualQuality
get
quality
()
{
return
this
.
_quality
}
async
setQuality
(
quality
:
VisualQuality
)
{
if
(
quality
===
this
.
_quality
)
return
await
this
.
eachRepresentation
((
repr
,
update
)
=>
{
if
(
repr
.
params
&&
repr
.
params
.
values
.
type
.
params
.
quality
!==
undefined
)
{
const
{
name
,
params
}
=
repr
.
params
.
values
.
type
update
.
to
(
repr
.
transform
.
ref
).
update
(
StateTransforms
.
Representation
.
StructureRepresentation3D
,
props
=>
({
...
props
,
type
:
{
name
,
params
:
{
...
params
,
quality
}}})
)
}
})
this
.
_quality
=
quality
}
}
async
preset
()
{
async
preset
()
{
...
...
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