schema updates and cli path fixes

README.md

src/cli/chem-comp-bond/create-table.ts

src/cli/cifschema/index.ts

src/cli/cifschema/util/generate.ts

src/cli/lipid-params/index.ts

src/extensions/rcsb/graphql/types.ts

src/mol-io/reader/cif/schema/bird.ts

src/mol-io/reader/cif/schema/ccd.ts

src/mol-io/reader/cif/schema/cif-core.ts

src/mol-io/reader/cif/schema/mmcif.ts