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Commit 3ba23b96 authored by Alexander Rose's avatar Alexander Rose
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fixed carb terminal links

parent aad85a79
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......@@ -203,12 +203,12 @@ function markCarbohydrate(loci: Loci, structure: Structure, apply: (interval: In
for (const e of loci.elements) {
OrderedSet.forEach(e.indices, v => {
const { model, elements } = e.unit
const { index, offsets } = model.atomicHierarchy.residueAtomSegments
const { index, offsets } = model.atomicHierarchy.residueAtomSegments
const rI = index[elements[v]]
const unitIndexMin = OrderedSet.findPredecessorIndex(elements, offsets[rI])
const unitIndexMax = OrderedSet.findPredecessorIndex(elements, offsets[rI + 1] - 1)
const unitIndexInterval = Interval.ofRange(unitIndexMin, unitIndexMax)
if(!OrderedSet.isSubset(e.indices, unitIndexInterval)) return
if (!OrderedSet.isSubset(e.indices, unitIndexInterval)) return
const eI = getAnomericCarbon(e.unit, rI)
if (eI !== undefined) {
const idx = getElementIndex(e.unit, eI)
......
......@@ -34,9 +34,9 @@ async function createCarbohydrateTerminalLinkCylinderMesh(ctx: VisualContext, st
const l = terminalLinks[edgeIndex]
if (l.fromCarbohydrate) {
Vec3.copy(posA, elements[l.carbohydrateIndex].geometry.center)
l.elementUnit.conformation.position(l.elementIndex, posB)
l.elementUnit.conformation.position(l.elementUnit.elements[l.elementIndex], posB)
} else {
l.elementUnit.conformation.position(l.elementIndex, posA)
l.elementUnit.conformation.position(l.elementUnit.elements[l.elementIndex], posA)
Vec3.copy(posB, elements[l.carbohydrateIndex].geometry.center)
}
},
......@@ -123,7 +123,7 @@ function getTerminalLinkLoci(pickingId: PickingId, structure: Structure, id: num
l.elementUnit, l.elementIndex,
carb.unit, carbIndex as StructureElement.UnitIndex
)
])
])
}
return EmptyLoci
}
......
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