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Commit 451dc126 authored by Alexander Rose's avatar Alexander Rose
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cleanup

parent a3fb7762
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......@@ -15,7 +15,7 @@ export interface HelixOrientation {
centers: ArrayLike<number>
}
/** Use same definition as GROMACS' helixorient */
/** Usees same definition as GROMACS' helixorient */
export function calcHelixOrientation(model: Model): HelixOrientation {
const { x, y, z } = model.atomicConformation;
const { polymerType, traceElementIndex } = model.atomicHierarchy.derived.residue;
......@@ -27,10 +27,6 @@ export function calcHelixOrientation(model: Model): HelixOrientation {
const centers = new Float32Array(n * 3);
const axes = new Float32Array(n * 3);
// const twists = new Float32Array(n);
// const diffs = new Float32Array(n);
// const rises = new Float32Array(n);
// const radii = new Float32Array(n);
let i = 0;
let j = -1;
......@@ -88,12 +84,7 @@ export function calcHelixOrientation(model: Model): HelixOrientation {
Vec3.normalize(axis, axis);
Vec3.toArray(axis, axes, j3);
// if (j > 0) {
// diffs[j] = Vec3.angle(axis, prevAxis);
// }
const tmp = Math.cos(Vec3.angle(diff13, diff24));
// twists[j] = 180.0 / Math.PI * Math.acos(tmp);
const diff13Length = Vec3.magnitude(diff13);
const diff24Length = Vec3.magnitude(diff24);
......@@ -104,9 +95,6 @@ export function calcHelixOrientation(model: Model): HelixOrientation {
// angle between diff13 and diff24 is close to 0
Math.max(2.0, 2.0 * (1.0 - tmp))
);
// radii[j] = r;
// rises[j] = Math.abs(Vec3.dot(r23, axis));
Vec3.scale(v1, diff13, r / diff13Length);
Vec3.sub(v1, a2, v1);
......@@ -142,7 +130,6 @@ export function calcHelixOrientation(model: Model): HelixOrientation {
Vec3.set(a1, x[eI], y[eI], z[eI]);Vec3.copy(vt, a1);
Vec3.projectPointOnVector(vt, vt, axis, v1);
Vec3.toArray(vt, centers, e3);
}
return {
......
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