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Michal Malý
Molstar
Commits
60b5d2d3
Unverified
Commit
60b5d2d3
authored
1 year ago
by
David Sehnal
Committed by
GitHub
1 year ago
Browse files
Options
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Plain Diff
fix labels & optimize getData (#811)
parent
eb749a2a
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Changes
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2 changed files
src/extensions/sb-ncbr/partial-charges/labels.ts
+2
-1
2 additions, 1 deletion
src/extensions/sb-ncbr/partial-charges/labels.ts
src/extensions/sb-ncbr/partial-charges/property.ts
+51
-35
51 additions, 35 deletions
src/extensions/sb-ncbr/partial-charges/property.ts
with
53 additions
and
36 deletions
src/extensions/sb-ncbr/partial-charges/labels.ts
+
2
−
1
View file @
60b5d2d3
import
{
StructureElement
,
StructureProperties
}
from
'
../../../mol-model/structure
'
;
import
{
StructureElement
,
StructureProperties
}
from
'
../../../mol-model/structure
'
;
import
{
LociLabel
}
from
'
../../../mol-plugin-state/manager/loci-label
'
;
import
{
LociLabel
}
from
'
../../../mol-plugin-state/manager/loci-label
'
;
import
{
SbNcbrPartialChargesPropertyProvider
}
from
'
./property
'
;
import
{
SbNcbrPartialChargesPropertyProvider
,
hasPartialChargesCategories
}
from
'
./property
'
;
import
{
Loci
}
from
'
../../../mol-model/loci
'
;
import
{
Loci
}
from
'
../../../mol-model/loci
'
;
import
{
PluginContext
}
from
'
../../../mol-plugin/context
'
;
import
{
PluginContext
}
from
'
../../../mol-plugin/context
'
;
import
{
LociLabelProvider
}
from
'
../../../mol-plugin-state/manager/loci-label
'
;
import
{
LociLabelProvider
}
from
'
../../../mol-plugin-state/manager/loci-label
'
;
...
@@ -11,6 +11,7 @@ export function SbNcbrPartialChargesLociLabelProvider(ctx: PluginContext): LociL
...
@@ -11,6 +11,7 @@ export function SbNcbrPartialChargesLociLabelProvider(ctx: PluginContext): LociL
if
(
!
StructureElement
.
Loci
.
is
(
loci
))
return
;
if
(
!
StructureElement
.
Loci
.
is
(
loci
))
return
;
const
model
=
loci
.
structure
.
model
;
const
model
=
loci
.
structure
.
model
;
if
(
!
hasPartialChargesCategories
(
model
))
return
;
const
data
=
SbNcbrPartialChargesPropertyProvider
.
get
(
model
).
value
;
const
data
=
SbNcbrPartialChargesPropertyProvider
.
get
(
model
).
value
;
if
(
!
data
)
return
;
if
(
!
data
)
return
;
...
...
This diff is collapsed.
Click to expand it.
src/extensions/sb-ncbr/partial-charges/property.ts
+
51
−
35
View file @
60b5d2d3
...
@@ -15,44 +15,60 @@ export interface SBNcbrPartialChargeData {
...
@@ -15,44 +15,60 @@ export interface SBNcbrPartialChargeData {
maxAbsoluteAtomCharges
:
IdToCharge
;
maxAbsoluteAtomCharges
:
IdToCharge
;
maxAbsoluteResidueCharges
:
IdToCharge
;
maxAbsoluteResidueCharges
:
IdToCharge
;
maxAbsoluteAtomChargeAll
:
number
;
maxAbsoluteAtomChargeAll
:
number
;
params
:
PartialChargesPropertyParams
;
}
}
const
PartialChargesPropertyParams
=
{
const
PartialChargesPropertyParams
=
{
typeId
:
PD
.
Select
<
number
>
(
0
,
[[
0
,
'
0
'
]]),
typeId
:
PD
.
Select
<
number
>
(
0
,
[[
0
,
'
0
'
]]),
};
};
type
PartialChargesPropertyParams
=
typeof
PartialChargesPropertyParams
;
type
PartialChargesPropertyParams
=
typeof
PartialChargesPropertyParams
;
const
d
efaultPartialChargesPropertyParams
=
PD
.
clone
(
PartialChargesPropertyParams
);
const
D
efaultPartialChargesPropertyParams
=
PD
.
clone
(
PartialChargesPropertyParams
);
function
getParams
(
model
:
Model
)
{
function
getParams
(
model
:
Model
)
{
const
typeIdToMethod
=
getTypeIdToMethod
(
model
);
return
getData
(
model
).
value
?.
params
??
DefaultPartialChargesPropertyParams
;
const
options
=
Array
.
from
(
typeIdToMethod
.
entries
()).
map
(
([
typeId
,
method
])
=>
[
typeId
,
method
]
as
[
number
,
string
]
);
return
{
typeId
:
PD
.
Select
<
number
>
(
1
,
options
),
};
}
}
async
function
getData
(
model
:
Model
):
Promise
<
CustomProperty
.
Data
<
SBNcbrPartialChargeData
|
undefined
>>
{
const
PropertyKey
=
'
sb-ncbr-partial-charges-property-data
'
;
if
(
!
SbNcbrPartialChargesPropertyProvider
.
isApplicable
(
model
))
return
{
value
:
undefined
};
function
getData
(
model
:
Model
):
CustomProperty
.
Data
<
SBNcbrPartialChargeData
|
undefined
>
{
const
typeIdToMethod
=
getTypeIdToMethod
(
model
);
if
(
PropertyKey
in
model
.
_staticPropertyData
)
{
const
typeIdToAtomIdToCharge
=
getTypeIdToAtomIdToCharge
(
model
);
return
model
.
_staticPropertyData
[
PropertyKey
];
const
typeIdToResidueToCharge
=
getTypeIdToResidueIdToCharge
(
model
,
typeIdToAtomIdToCharge
);
}
const
maxAbsoluteAtomCharges
=
getMaxAbsoluteCharges
(
typeIdToAtomIdToCharge
);
const
maxAbsoluteResidueCharges
=
getMaxAbsoluteCharges
(
typeIdToResidueToCharge
);
let
data
:
CustomProperty
.
Data
<
SBNcbrPartialChargeData
|
undefined
>
;
const
maxAbsoluteAtomChargeAll
=
getMaxAbsoluteAtomChargeAll
(
maxAbsoluteAtomCharges
,
maxAbsoluteResidueCharges
);
if
(
!
SbNcbrPartialChargesPropertyProvider
.
isApplicable
(
model
))
{
return
{
data
=
{
value
:
undefined
};
value
:
{
}
else
{
typeIdToMethod
,
const
typeIdToMethod
=
getTypeIdToMethod
(
model
);
typeIdToAtomIdToCharge
,
const
typeIdToAtomIdToCharge
=
getTypeIdToAtomIdToCharge
(
model
);
typeIdToResidueToCharge
,
const
typeIdToResidueToCharge
=
getTypeIdToResidueIdToCharge
(
model
,
typeIdToAtomIdToCharge
);
maxAbsoluteAtomCharges
,
const
maxAbsoluteAtomCharges
=
getMaxAbsoluteCharges
(
typeIdToAtomIdToCharge
);
maxAbsoluteResidueCharges
,
const
maxAbsoluteResidueCharges
=
getMaxAbsoluteCharges
(
typeIdToResidueToCharge
);
maxAbsoluteAtomChargeAll
,
const
maxAbsoluteAtomChargeAll
=
getMaxAbsoluteAtomChargeAll
(
maxAbsoluteAtomCharges
,
maxAbsoluteResidueCharges
);
},
};
const
options
=
Array
.
from
(
typeIdToMethod
.
entries
()).
map
(
([
typeId
,
method
])
=>
[
typeId
,
method
]
as
[
number
,
string
]
);
const
params
=
{
typeId
:
PD
.
Select
<
number
>
(
1
,
options
),
};
data
=
{
value
:
{
typeIdToMethod
,
typeIdToAtomIdToCharge
,
typeIdToResidueToCharge
,
maxAbsoluteAtomCharges
,
maxAbsoluteResidueCharges
,
maxAbsoluteAtomChargeAll
,
params
,
},
};
}
model
.
_staticPropertyData
[
PropertyKey
]
=
data
;
return
data
;
}
}
function
getTypeIdToMethod
(
model
:
Model
)
{
function
getTypeIdToMethod
(
model
:
Model
)
{
...
@@ -164,11 +180,11 @@ function getMaxAbsoluteAtomChargeAll(
...
@@ -164,11 +180,11 @@ function getMaxAbsoluteAtomChargeAll(
export
function
hasPartialChargesCategories
(
model
:
Model
):
boolean
{
export
function
hasPartialChargesCategories
(
model
:
Model
):
boolean
{
if
(
!
model
||
!
MmcifFormat
.
is
(
model
.
sourceData
))
return
false
;
if
(
!
model
||
!
MmcifFormat
.
is
(
model
.
sourceData
))
return
false
;
const
names
=
model
.
sourceData
.
data
.
frame
.
categoryNames
;
const
{
categories
}
=
model
.
sourceData
.
data
.
frame
;
return
(
return
(
names
.
includes
(
'
atom_site
'
)
&&
'
atom_site
'
in
categories
&&
names
.
includes
(
'
sb_ncbr_partial_atomic_charges
'
)
&&
'
sb_ncbr_partial_atomic_charges
'
in
categories
&&
names
.
includes
(
'
sb_ncbr_partial_atomic_charges_meta
'
)
'
sb_ncbr_partial_atomic_charges_meta
'
in
categories
);
);
}
}
...
@@ -178,11 +194,11 @@ SBNcbrPartialChargeData | undefined
...
@@ -178,11 +194,11 @@ SBNcbrPartialChargeData | undefined
>
=
CustomModelProperty
.
createProvider
({
>
=
CustomModelProperty
.
createProvider
({
label
:
'
SB NCBR Partial Charges Property Provider
'
,
label
:
'
SB NCBR Partial Charges Property Provider
'
,
descriptor
:
CustomPropertyDescriptor
({
descriptor
:
CustomPropertyDescriptor
({
name
:
'
sb-ncbr-property-provider
'
,
name
:
'
sb-ncbr-
partial-charges-
property-provider
'
,
}),
}),
type
:
'
static
'
,
type
:
'
static
'
,
defaultParams
:
d
efaultPartialChargesPropertyParams
,
defaultParams
:
D
efaultPartialChargesPropertyParams
,
getParams
:
(
data
:
Model
)
=>
getParams
(
data
),
getParams
:
(
data
:
Model
)
=>
getParams
(
data
),
isApplicable
:
(
model
:
Model
)
=>
hasPartialChargesCategories
(
model
),
isApplicable
:
(
model
:
Model
)
=>
hasPartialChargesCategories
(
model
),
obtain
:
(
_ctx
:
CustomProperty
.
Context
,
model
:
Model
)
=>
getData
(
model
),
obtain
:
(
_ctx
:
CustomProperty
.
Context
,
model
:
Model
)
=>
Promise
.
resolve
(
getData
(
model
)
)
,
});
});
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