fix building of cli tools

.gitignore

README.md

package.json

src/cli/chem-comp-bond/create-table.ts

src/cli/cif2bcif/converter.ts

src/cli/cif2bcif/index.ts

src/cli/cifschema/index.ts

src/cli/cifschema/util/cif-dic.ts

src/cli/cifschema/util/generate.ts

src/cli/cifschema/util/helper.ts

src/cli/cifschema/util/schema.ts

src/cli/lipid-params/index.ts

src/cli/state-docs/index.ts

src/cli/state-docs/pd-to-md.ts

src/cli/structure-info/helpers.ts

src/cli/structure-info/model.ts

src/cli/structure-info/volume.ts

src/perf-tests/mol-script.ts

tsconfig.json

tsconfig.servers.json