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Michal Malý
Molstar
Commits
75c68689
Commit
75c68689
authored
7 years ago
by
Alexander Rose
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added more useful mmcif fields
parent
fe853077
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2 changed files
data/mmcif-popular-field-names.csv
+31
-0
31 additions, 0 deletions
data/mmcif-popular-field-names.csv
src/mol-io/reader/cif/schema/mmcif.ts
+34
-0
34 additions, 0 deletions
src/mol-io/reader/cif/schema/mmcif.ts
with
65 additions
and
0 deletions
data/mmcif-popular-field-names.csv
+
31
−
0
View file @
75c68689
...
...
@@ -65,6 +65,12 @@ exptl.method
struct.entry_id
struct.title
struct_asym.id
struct_asym.pdbx_blank_PDB_chainid_flag
struct_asym.pdbx_modified
struct_asym.entity_id
struct_asym.details
struct_conf.conf_type_id
struct_conf.id
struct_conf.pdbx_PDB_helix_id
...
...
@@ -98,6 +104,7 @@ struct_conn.pdbx_ptnr1_PDB_ins_code
struct_conn.pdbx_ptnr1_standard_comp_id
struct_conn.ptnr1_symmetry
struct_conn.ptnr2_label_asym_id
struct_conn.ptnr2_label_comp_id
struct_conn.ptnr2_label_seq_id
struct_conn.ptnr2_label_atom_id
struct_conn.pdbx_ptnr2_label_alt_id
...
...
@@ -144,6 +151,30 @@ struct_sheet_range.end_auth_comp_id
struct_sheet_range.end_auth_asym_id
struct_sheet_range.end_auth_seq_id
struct_site.id
struct_site.pdbx_evidence_code
struct_site.pdbx_auth_asym_id
struct_site.pdbx_auth_comp_id
struct_site.pdbx_auth_seq_id
struct_site.pdbx_auth_ins_code
struct_site.pdbx_num_residues
struct_site.details
struct_site_gen.id
struct_site_gen.site_id
struct_site_gen.pdbx_num_res
struct_site_gen.label_comp_id
struct_site_gen.label_asym_id
struct_site_gen.label_seq_id
struct_site_gen.pdbx_auth_ins_code
struct_site_gen.auth_comp_id
struct_site_gen.auth_asym_id
struct_site_gen.auth_seq_id
struct_site_gen.label_atom_id
struct_site_gen.label_alt_id
struct_site_gen.symmetry
struct_site_gen.details
symmetry.entry_id
symmetry.space_group_name_H-M
symmetry.pdbx_full_space_group_name_H
...
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src/mol-io/reader/cif/schema/mmcif.ts
+
34
−
0
View file @
75c68689
...
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@@ -96,6 +96,13 @@ export const mmCIF_Schema = {
entry_id
:
str
,
title
:
str
,
},
struct_asym
:
{
details
:
str
,
entity_id
:
str
,
id
:
str
,
pdbx_modified
:
str
,
pdbx_blank_PDB_chainid_flag
:
Aliased
<
'
Y
'
|
'
N
'
>
(
str
),
},
struct_conf
:
{
beg_label_asym_id
:
str
,
beg_label_comp_id
:
str
,
...
...
@@ -132,6 +139,7 @@ export const mmCIF_Schema = {
ptnr1_symmetry
:
str
,
ptnr2_label_asym_id
:
str
,
ptnr2_label_atom_id
:
str
,
ptnr2_label_comp_id
:
str
,
ptnr2_label_seq_id
:
int
,
ptnr2_auth_asym_id
:
str
,
ptnr2_auth_comp_id
:
str
,
...
...
@@ -180,6 +188,32 @@ export const mmCIF_Schema = {
pdbx_beg_PDB_ins_code
:
str
,
pdbx_end_PDB_ins_code
:
str
,
},
struct_site
:
{
details
:
str
,
id
:
str
,
pdbx_num_residues
:
int
,
pdbx_evidence_code
:
str
,
pdbx_auth_asym_id
:
str
,
pdbx_auth_comp_id
:
str
,
pdbx_auth_seq_id
:
str
,
pdbx_auth_ins_code
:
str
,
},
struct_site_gen
:
{
details
:
str
,
id
:
str
,
label_alt_id
:
str
,
label_asym_id
:
str
,
label_atom_id
:
str
,
label_comp_id
:
str
,
label_seq_id
:
int
,
auth_asym_id
:
str
,
auth_comp_id
:
str
,
auth_seq_id
:
str
,
site_id
:
str
,
symmetry
:
str
,
pdbx_auth_ins_code
:
str
,
pdbx_num_res
:
int
,
},
symmetry
:
{
entry_id
:
str
,
cell_setting
:
Aliased
<
'
triclinic
'
|
'
monoclinic
'
|
'
orthorhombic
'
|
'
tetragonal
'
|
'
rhombohedral
'
|
'
trigonal
'
|
'
hexagonal
'
|
'
cubic
'
>
(
str
),
...
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