update packages

package-lock.json

package.json

src/cli/chem-comp-dict/create-ions.ts

src/cli/chem-comp-dict/create-table.ts

src/cli/cif2bcif/index.ts

src/cli/cifschema/index.ts

src/cli/lipid-params/index.ts

src/cli/structure-info/model.ts

src/cli/structure-info/volume.ts

src/extensions/rcsb/graphql/codegen.yml

src/perf-tests/mol-script.ts

src/servers/model/config.ts

src/servers/model/preprocess.ts

src/servers/model/preprocess/master.ts

src/servers/model/preprocess/parallel.ts

src/servers/model/properties/providers/pdbe.ts

src/servers/model/utils/fetch-props-pdbe.ts

src/servers/model/utils/fetch-retry.ts

src/servers/plugin-state/config.ts

src/servers/volume/config.ts