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Created with Raphaël 2.2.09Jan8763224Dec232019181716131211109876543230Nov29282726252422212019181716151413128752131Oct30292827252423222118171615141110975432130Sep27262524232220191613121110954330Aug2928272625242322212019181615141312copy structure.lookup.findUnitIndices resultsfix interactions/valence-model label behaviorfix .firstChainLoc assignment in handleUnitChainsSimplehelper to copy lookup resultswip, interactions refinerswip, interactions, various fixesimplemented areFeaturesWithinDistanceSqwip, refactored refineInteractions, added weakHydrogenBondsRefinerbetter types for IntAdjacencyGraph and GridLookup3Dwip, interactions, fix hydrogen bond distance testwip, interactions refinementwip, renamed links to contacts for interactionswip, interactionsimpoved SetUtilswip, interactionswip, interactionsadd rings selection to UIwip, various nci fixes and tweaksfix, rings must have at least three elementstweak, use Box3D.sizeViewer: load from URLpluginpluginmol-theme: truncate too long entry namesmol-plugin: DataManager [wip]wip, charged interactionswip, refactored interaction computationwip, interactions, halogen bondswip, interactions & valence-model label providerswip, various interactions computation fixesfix unitTransforms reset with complex representationfix unit instance markingwip, interactions, features in invariant spaceimproved hbond param handlingwip, interactions & hydrogen bondsbonds tweaksadd unit kind helpers to Structurerenamed 'structure-element-index' to 'unit-element-index'wip, bond compute todosalways use root topology for valence modeladd CustomStructureProperty.type determining inheritancefactored out Unit BaseProperties
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