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Created with Raphaël 2.2.015Jan13121098763224Dec232019181716131211109876543230Nov29282726252422212019181716151413128752131Oct30292827252423222118171615141110975432130Sep27262524232220191613121110954330Aug29282726252423222120trajectory from topology and coordinatesadd AtomicConformation.xyzDefined & improve getAtomicRangesfix sequence creation from hierarchyadd index-pair bond providertake .isDefined into account in CifField.ofColumnfix psf parseradd basic psf readerupdated packagesuse eslint instead of tslintvery basic ccp4 spec testformating & code styleplugin, trajectory from model and coordinatesadded dcd format parseradded coordinates support to modelforce cast from unknown for state dependenciesfixed `addUnitPositiveCharges`consider overlapping secondary structure elements from mmCIFadded option to toggle far clippingsupport interactions loci in getBoundingSphereinteractions, links to contacts renamingtweaked interaction paramsstring, kebab casegeneral support for aromatic ringsimproved bond handlingadd interactions repr to surroundings behaviornci-2nci-2interactions repr: use size themefixe & improved interaction refinersimproved checkLineOfSightcopy structure.lookup.findUnitIndices resultsfix interactions/valence-model label behaviorfix .firstChainLoc assignment in handleUnitChainsSimplehelper to copy lookup resultswip, interactions refinerswip, interactions, various fixesimplemented areFeaturesWithinDistanceSqwip, refactored refineInteractions, added weakHydrogenBondsRefinerbetter types for IntAdjacencyGraph and GridLookup3Dwip, interactions, fix hydrogen bond distance testwip, interactions refinementwip, renamed links to contacts for interactions