Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
M
Molstar
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package registry
Container Registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Terms and privacy
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Michal Malý
Molstar
Commits
2797b451
Commit
2797b451
authored
4 years ago
by
Alexander Rose
Browse files
Options
Downloads
Patches
Plain Diff
add interesting pdb entries info
parent
e0b98f70
No related branches found
No related tags found
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
docs/interesting-pdb-entries.md
+22
-0
22 additions, 0 deletions
docs/interesting-pdb-entries.md
with
22 additions
and
0 deletions
docs/interesting-pdb-entries.md
0 → 100644
+
22
−
0
View file @
2797b451
*
Cyclic polymers (1sfi, 6dny, 1HVZ)
*
B-DNA (1bna)
*
Missing carbonyl oxygen (1gfl)
*
Mono-saccharides with alt locs (1B5F)
*
Microheterogeneity (1EJG, 3NIR)
*
PNA: peptide nucleic acid (5eme, 1xj9)
*
Peptide derived residues
*
GFP chromophores (5Z6Y)
*
Nucleotides that don’t have a parent base set, i.e. detect purine/pyrimidine from geometry (THX in 1AUL, OMC in e.g. 5D3G)
*
Bases with modified ring atoms
*
DZ has C1 instead of N1 (e.g. 5I4N)
*
DP has N5 instead of C5 and C7 instead of N7 (e.g. 5I4N)
*
Beta & Gamma peptides (e.g. 1GAC, 6PQF)
*
Mixed (heterogeneous) all-atom/trace-only RNA model (1JGQ)
*
Polymers with residues with missing trace atoms (e.g. 2QFJ)
*
Modified RNA bases (1y26, 5L4O)
*
Discontinuous chains, i.e. gaps in the sequence (3sn6)
*
Lots of sheets (1cbs)
*
DNA (2np2, 1d66)
*
C-alpha only (2rcj)
*
Not cyclic, but termini are backbone-only and within distance but seqIds are not compatible (6SW3)
*
Close backbone atoms but not linked (e.g. 4HIV)
\ No newline at end of file
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment